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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031323 through 18771 annotations produced 1 hits


Annotation Number : CG5139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031323
Gbrowse : chr2L:1198598-1199189 (-) // 100.0 //
Probeset : 1626441_at
Accessions : protein= NP_608587;, nucleotide= NM_134743;
FlyMine data for FBgn0031323.
VDRC has 3 RNAi stocks for FBgn0031323 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head4 00 of 4 0.00Down
Eye2 10 of 4 0.02Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland8 40 of 4 0.08Down
Crop5 10 of 4 0.10Down
Midgut3 10 of 4 0.00Down
Tubule7 00 of 4 0.10Down
Hindgut7 10 of 4 0.10Down
Heart2 00 of 4 0.02Down
Fat body5 20 of 4 0.05Down
Ovary4 11 of 4 0.00Down
Testis1147 184 of 411.30Up
Male accessory glands8 00 of 4 0.10Down
Virgin spermatheca6 11 of 4 0.06Down
Mated spermatheca5 10 of 4 0.05Down
Adult carcass10 30 of 4 0.10Down
Larval CNS3 10 of 4 0.03Down
Larval Salivary gland4 10 of 4 0.04Down
Larval midgut4 10 of 4 0.04Down
Larval tubule7 10 of 4 0.10Down
Larval hindgut4 10 of 4 0.04Down
Larval fat body104 613 of 4 1.00None
Larval trachea10 63 of 4 0.10Down
Larval carcass4 10 of 4 0.04Down
S2 cells (growing)5 10 of 4 0.05Down
Whole fly101 94 of 4

Looking for FBgn0031323. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime