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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031327 through 18771 annotations produced 1 hits



(CG5397):

Annotation Number : CG5397
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031327
Gbrowse : chr2L:1240037-1242205 (+) // 100.0 //
Probeset : 1638892_at
Accessions : protein= NP_608591;, nucleotide= NM_134747;
Interpro : 0004772 // sterol O-acyltransferase activity // inferred from sequence or structural similarity /// 0008415 // acyltrans
FlyMine data for FBgn0031327.
BDGP gene expression has embryonic in situ data for CG5397: 7 pix of staining in 3 body parts.
Homophila reports that CG5397 is a close match (4e-18) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
BioGrid reports that CG5397 interacts with CG5848 .
VDRC has 2 RNAi stocks for FBgn0031327 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 24 of 4 0.40Down
Head331 214 of 4 4.40Up
Eye190 134 of 4 2.54Up
Thoracicoabdominal ganglion15 23 of 4 0.20Down
Salivary gland38 103 of 4 0.51Down
Crop14 13 of 4 0.20Down
Midgut12 20 of 4 0.20Down
Tubule7 00 of 4 0.10Down
Hindgut21 24 of 4 0.30Down
Heart202 64 of 4 2.70Up
Fat body29 54 of 4 0.39Down
Ovary7 13 of 4 0.10Down
Testis16 14 of 4 0.20Down
Male accessory glands32 94 of 4 0.40Down
Virgin spermatheca23 04 of 4 0.32Down
Mated spermatheca21 14 of 4 0.29Down
Adult carcass458 384 of 4 6.10Up
Larval CNS15 14 of 4 0.21Down
Larval Salivary gland38 14 of 4 0.51Down
Larval midgut29 24 of 4 0.40Down
Larval tubule18 34 of 4 0.20Down
Larval hindgut44 44 of 4 0.59Down
Larval fat body35 84 of 4 0.50Down
Larval trachea1972 1144 of 426.30Up
Larval carcass254 244 of 4 3.40Up
S2 cells (growing)53 44 of 4 0.72Down
Whole fly75 44 of 4

Looking for FBgn0031327. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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