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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031332 through 18771 annotations produced 1 hits



(CG5556):

Annotation Number : CG5556
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031332
Gbrowse : chr2L:1351859-1352869 (-) // 100.0 //
Probeset : 1627876_at
Accessions : protein= NP_608595;, nucleotide= NM_134751;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0031332.
VDRC has 1 RNAi stocks for FBgn0031332 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head2 10 of 4 0.10Down
Eye2 10 of 4 0.05Down
Thoracicoabdominal ganglion6 10 of 4 0.10Down
Salivary gland15 41 of 4 0.33Down
Crop4 10 of 4 0.10Down
Midgut3 10 of 4 0.10Down
Tubule6 10 of 4 0.10Down
Hindgut4 20 of 4 0.10Down
Heart1 00 of 4 0.04Down
Fat body7 20 of 4 0.15Down
Ovary3 00 of 4 0.10Down
Testis541 184 of 411.80Up
Male accessory glands7 10 of 4 0.20Down
Virgin spermatheca2 00 of 4 0.04Down
Mated spermatheca6 10 of 4 0.14Down
Adult carcass9 10 of 4 0.20Down
Larval CNS5 10 of 4 0.11Down
Larval Salivary gland5 20 of 4 0.12Down
Larval midgut8 20 of 4 0.19Down
Larval tubule4 20 of 4 0.10Down
Larval hindgut4 00 of 4 0.09Down
Larval fat body36 153 of 4 0.80None
Larval trachea1 10 of 4 0.04Down
Larval carcass3 10 of 4 0.09Down
S2 cells (growing)2 10 of 4 0.05Down
Whole fly46 54 of 4

Looking for FBgn0031332. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime