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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031335 through 18771 annotations produced 1 hits



/// (CG5565 /// DsimCG5565):

Annotation Number : CG5565
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031335
Gbrowse : chr2L:1354949-1355924 (-) // 100.0 //
Probeset : 1623008_at
Accessions : protein= NP_608598;, nucleotide= NM_134754;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008967 // phosphoglycolate phosphatase activit
FlyMine data for FBgn0031335.
BDGP gene expression has embryonic in situ data for CG5565: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031335 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.00Down
Head5 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion5 ± 20 of 4 0.00Down
Salivary gland11 ± 10 of 4 0.09Down
Crop9 ± 32 of 4 0.10Down
Midgut4 ± 20 of 4 0.00Down
Tubule6 ± 00 of 4 0.10Down
Hindgut7 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.01Down
Fat body16 ± 63 of 4 0.13Down
Ovary2 ± 10 of 4 0.00Down
Testis1229 ± 154 of 4 9.70Up
Male accessory glands6 ± 10 of 4 0.00Down
Virgin spermatheca6 ± 12 of 4 0.05Down
Mated spermatheca11 ± 24 of 4 0.09Down
Adult carcass8 ± 41 of 4 0.10Down
Larval CNS7 ± 21 of 4 0.06Down
Larval Salivary gland7 ± 20 of 4 0.06Down
Larval midgut6 ± 20 of 4 0.05Down
Larval tubule6 ± 20 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.04Down
Larval fat body110 ± 504 of 4 0.90None
Larval trachea6 ± 51 of 4 0.06Down
Larval carcass5 ± 20 of 4 0.05Down
S2 cells (growing)4 ± 00 of 4 0.04Down
Whole fly126 ± 44 of 4

Looking for FBgn0031335. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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