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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031345 through 18771 annotations produced 1 hits



(CG18132):

Annotation Number : CG18132
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031345
Gbrowse : chr2L:1516796-1517438 (-) // 100.0 //
Probeset : 1640543_at
Accessions : protein= NP_608603;, nucleotide= NM_134759;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031345.
VDRC has 2 RNAi stocks for FBgn0031345 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye0 00 of 4 0.02Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland5 30 of 4 0.16Down
Crop3 10 of 4 0.10Down
Midgut0 00 of 4 0.00Down
Tubule2 00 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart1 00 of 4 0.05Down
Fat body2 20 of 4 0.07Down
Ovary0 00 of 4 0.00Down
Testis433 34 of 412.10Up
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca0 00 of 4 0.02Down
Mated spermatheca1 00 of 4 0.03Down
Adult carcass7 11 of 4 0.20Down
Larval CNS1 00 of 4 0.05Down
Larval Salivary gland1 00 of 4 0.03Down
Larval midgut1 00 of 4 0.03Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.02Down
Larval fat body48 232 of 4 1.40None
Larval trachea2 30 of 4 0.06Down
Larval carcass0 00 of 4 0.02Down
S2 cells (growing)1 00 of 4 0.04Down
Whole fly35 14 of 4

Looking for FBgn0031345. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime