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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031356 through 18771 annotations produced 1 hits



(CG17660):

Annotation Number : CG17660
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031356
Gbrowse : chr2L:1707131-1710415 (-) // 100.0 //
Probeset : 1629600_at
Accessions : protein= NP_608612;, nucleotide= NM_134768;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0031356.
BioGrid reports that CG17660 interacts with CG7939 .
VDRC has 3 RNAi stocks for FBgn0031356 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain237 ± 34 of 4 1.40Up
Head146 ± 34 of 4 0.90None
Eye140 ± 54 of 4 0.82Down
Thoracicoabdominal ganglion235 ± 64 of 4 1.40Up
Salivary gland1178 ± 454 of 4 6.89Up
Crop1033 ± 384 of 4 6.00Up
Midgut679 ± 344 of 4 4.00Up
Tubule770 ± 904 of 4 4.50Up
Hindgut520 ± 154 of 4 3.00Up
Heart138 ± 74 of 4 0.81Down
Fat body178 ± 74 of 4 1.04None
Ovary295 ± 74 of 4 1.70Up
Testis209 ± 94 of 4 1.20Up
Male accessory glands380 ± 144 of 4 2.20Up
Virgin spermatheca140 ± 124 of 4 0.82None
Mated spermatheca149 ± 94 of 4 0.87None
Adult carcass150 ± 184 of 4 0.90None
Larval CNS319 ± 314 of 4 1.87Up
Larval Salivary gland699 ± 214 of 4 4.09Up
Larval midgut921 ± 504 of 4 5.38Up
Larval tubule639 ± 164 of 4 3.70Up
Larval hindgut525 ± 214 of 4 3.07Up
Larval fat body170 ± 184 of 4 1.00None
Larval trachea189 ± 94 of 4 1.11None
Larval carcass240 ± 134 of 4 1.40Up
S2 cells (growing)2099 ± 204 of 412.27Up
Whole fly171 ± 84 of 4

Looking for FBgn0031356. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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