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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031360 through 18771 annotations produced 1 hits



(CG31937):

Annotation Number : CG31937
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031360
Gbrowse : chr2L:1729945-1731072 (+) // 100.0 //
Probeset : 1623020_at
Accessions : protein= NP_608616;, nucleotide= NM_134772;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0031360.
Homophila reports that CG31937 is a close match (6e-11) to human gene HSD11;HSD11B1;HSD11L (NP_861420), a gene associated with Cortisone reductase deficiency, 604931 (3).
VDRC has 1 RNAi stocks for FBgn0031360 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 14 of 4 0.30Down
Head360 134 of 4 1.50Up
Eye260 214 of 4 1.09None
Thoracicoabdominal ganglion110 14 of 4 0.50Down
Salivary gland288 114 of 4 1.20Up
Crop385 84 of 4 1.60Up
Midgut242 54 of 4 1.00None
Tubule1412 684 of 4 5.90Up
Hindgut339 134 of 4 1.40Up
Heart720 624 of 4 3.02Up
Fat body1030 1314 of 4 4.31Up
Ovary179 24 of 4 0.70Down
Testis76 54 of 4 0.30Down
Male accessory glands245 64 of 4 1.00None
Virgin spermatheca857 394 of 4 3.59Up
Mated spermatheca712 564 of 4 2.98Up
Adult carcass813 214 of 4 3.40Up
Larval CNS87 94 of 4 0.37Down
Larval Salivary gland112 54 of 4 0.47Down
Larval midgut440 144 of 4 1.84Up
Larval tubule722 284 of 4 3.00Up
Larval hindgut295 84 of 4 1.24Up
Larval fat body264 214 of 4 1.10None
Larval trachea478 384 of 4 2.00Up
Larval carcass218 104 of 4 0.92None
S2 cells (growing)323 64 of 4 1.35Up
Whole fly239 84 of 4

Looking for FBgn0031360. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime