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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031367 through 18771 annotations produced 1 hits



calcutta cup (c-cup):

Annotation Number : CG15623
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031367
Gbrowse : chr2L:1831791-1832557 (-) // 100.0 //
Probeset : 1626651_at
Accessions : protein= NP_608623;, nucleotide= NM_134779;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0020037 // heme binding // inferred from electronic
FlyMine data for FBgn0031367.
BioGrid reports that CG15623 interacts with CG18067 CG8204 CG8614 .
VDRC has 2 RNAi stocks for FBgn0031367 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye2 11 of 4 0.04Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland8 30 of 4 0.14Down
Crop1 00 of 4 0.00Down
Midgut5 10 of 4 0.10Down
Tubule1 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart0 00 of 4 0.01Down
Fat body4 50 of 4 0.07Down
Ovary1 00 of 4 0.00Down
Testis773 244 of 412.80Up
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca2 10 of 4 0.04Down
Adult carcass2 00 of 4 0.00Down
Larval CNS0 00 of 4 0.02Down
Larval Salivary gland2 00 of 4 0.04Down
Larval midgut7 20 of 4 0.13Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 00 of 4 0.03Down
Larval fat body103 493 of 4 1.70None
Larval trachea5 61 of 4 0.08Down
Larval carcass5 10 of 4 0.09Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly60 54 of 4

Looking for FBgn0031367. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime