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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031372 through 18771 annotations produced 1 hits



(CG7295):

Annotation Number : CG7295
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031372
Gbrowse : chr2L:1869866-1870956 (+) // 100.0 //
Probeset : 1631812_at
Accessions : protein= NP_608628;, nucleotide= NM_134784;
Interpro : 0020037 // heme binding // inferred from electronic annotation
FlyMine data for FBgn0031372.
BDGP gene expression has embryonic in situ data for CG7295: 4 pix of staining in 1 body parts.
VDRC has 5 RNAi stocks for FBgn0031372 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head2 10 of 4 0.10Down
Eye1 00 of 4 0.05Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland3 00 of 4 0.13Down
Crop2 10 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule2 00 of 4 0.10Down
Hindgut1 00 of 4 0.00Down
Heart2 00 of 4 0.07Down
Fat body1 00 of 4 0.05Down
Ovary1 00 of 4 0.00Down
Testis411 204 of 414.30Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.04Down
Mated spermatheca1 00 of 4 0.04Down
Adult carcass1 00 of 4 0.10Down
Larval CNS1 10 of 4 0.05Down
Larval Salivary gland0 00 of 4 0.03Down
Larval midgut0 00 of 4 0.02Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.02Down
Larval fat body55 283 of 4 1.90None
Larval trachea4 61 of 4 0.16Down
Larval carcass1 10 of 4 0.06Down
S2 cells (growing)0 00 of 4 0.02Down
Whole fly28 14 of 4

Looking for FBgn0031372. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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