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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031377 through 18771 annotations produced 1 hits



(CG15356):

Annotation Number : CG15356
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031377
Gbrowse : chr2L:1976541-1980612 (-) // 100.0 //
Probeset : 1633326_at
Accessions : protein= NP_608633;, nucleotide= NM_134789;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
FlyMine data for FBgn0031377.
BioGrid reports that CG15356 interacts with CG3114 CG32171 CG32484 .
VDRC has 1 RNAi stocks for FBgn0031377 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 23 of 4 3.20Up
Head8 30 of 4 1.00None
Eye6 10 of 4 0.71None
Thoracicoabdominal ganglion19 30 of 4 2.30None
Salivary gland23 30 of 4 2.79Up
Crop4 20 of 4 0.60None
Midgut2 00 of 4 0.30None
Tubule2 00 of 4 0.30Down
Hindgut2 00 of 4 0.20None
Heart2 00 of 4 0.29None
Fat body5 40 of 4 0.64None
Ovary27 23 of 4 3.20Up
Testis7 10 of 4 0.90None
Male accessory glands8 30 of 4 1.00None
Virgin spermatheca2 00 of 4 0.30None
Mated spermatheca3 00 of 4 0.40None
Adult carcass10 40 of 4 1.20None
Larval CNS15 30 of 4 1.87None
Larval Salivary gland24 40 of 4 2.90Up
Larval midgut3 10 of 4 0.44None
Larval tubule1 00 of 4 0.20None
Larval hindgut6 30 of 4 0.76None
Larval fat body5 20 of 4 0.70None
Larval trachea11 70 of 4 1.31None
Larval carcass6 30 of 4 0.79None
S2 cells (growing)46 23 of 4 5.50Up
Whole fly8 40 of 4

Looking for FBgn0031377. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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