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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031401 through 18771 annotations produced 1 hits



(CG7082):

Annotation Number : CG7082
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031401
Gbrowse : chr2L:2220766-2225555 (+) // 100.0 //
Probeset : 1625175_s_at
Accessions : protein= NP_608657; /// NP_722773; /// NP_722774; /// NP_722775;, nucleotide= NM_134813; /// NM_164461; /// NM_164462; /// NM_164463;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elect
FlyMine data for FBgn0031401.
BDGP gene expression has embryonic in situ data for CG7082: 11 pix of staining in 9 body parts.
TRiP has 4 RNAi stocks for FBgn0031401 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031401 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain192 ± 44 of 4 0.80None
Head244 ± 94 of 4 1.00None
Eye268 ± 94 of 4 1.07None
Thoracicoabdominal ganglion218 ± 54 of 4 0.90None
Salivary gland417 ± 224 of 4 1.67Up
Crop844 ± 64 of 4 3.40Up
Midgut257 ± 94 of 4 1.00None
Tubule72 ± 54 of 4 0.30Down
Hindgut757 ± 94 of 4 3.00Up
Heart495 ± 394 of 4 1.98Up
Fat body126 ± 114 of 4 0.51Down
Ovary300 ± 64 of 4 1.20None
Testis693 ± 74 of 4 2.80Up
Male accessory glands103 ± 64 of 4 0.40Down
Virgin spermatheca165 ± 54 of 4 0.66Down
Mated spermatheca289 ± 144 of 4 1.15None
Adult carcass302 ± 114 of 4 1.20None
Larval CNS208 ± 74 of 4 0.83None
Larval Salivary gland177 ± 114 of 4 0.71Down
Larval midgut545 ± 734 of 4 2.18Up
Larval tubule65 ± 14 of 4 0.30Down
Larval hindgut920 ± 734 of 4 3.68Up
Larval fat body114 ± 324 of 4 0.50Down
Larval trachea533 ± 344 of 4 2.13Up
Larval carcass604 ± 554 of 4 2.41Up
S2 cells (growing)267 ± 24 of 4 1.07None
Whole fly250 ± 214 of 4

Looking for FBgn0031401. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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