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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031403 through 18771 annotations produced 1 hits



(CG15387):

Annotation Number : CG15387
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031403
Gbrowse : chr2L:2225797-2226840 (-) // 100.0 //
Probeset : 1640531_at
Accessions : protein= NP_001097058; /// NP_608659;, nucleotide= NM_001103588; /// NM_134815;
FlyMine data for FBgn0031403.
VDRC has 3 RNAi stocks for FBgn0031403 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 03 of 4 0.70None
Head9 ± 13 of 4 0.90None
Eye8 ± 11 of 4 0.79None
Thoracicoabdominal ganglion6 ± 11 of 4 0.60None
Salivary gland21 ± 42 of 4 2.01None
Crop11 ± 03 of 4 1.00None
Midgut16 ± 13 of 4 1.60None
Tubule5 ± 01 of 4 0.50Down
Hindgut9 ± 02 of 4 0.90None
Heart6 ± 22 of 4 0.57None
Fat body9 ± 53 of 4 0.94None
Ovary12 ± 14 of 4 1.20None
Testis17 ± 34 of 4 1.70None
Male accessory glands19 ± 24 of 4 1.90Up
Virgin spermatheca10 ± 13 of 4 0.96None
Mated spermatheca10 ± 04 of 4 0.99None
Adult carcass12 ± 31 of 4 1.10None
Larval CNS7 ± 14 of 4 0.75None
Larval Salivary gland29 ± 54 of 4 2.79Up
Larval midgut7 ± 20 of 4 0.75None
Larval tubule24 ± 24 of 4 2.30Up
Larval hindgut7 ± 02 of 4 0.69None
Larval fat body23 ± 14 of 4 2.20Up
Larval trachea10 ± 14 of 4 0.97None
Larval carcass5 ± 11 of 4 0.50None
S2 cells (growing)7 ± 14 of 4 0.73None
Whole fly10 ± 23 of 4

Looking for FBgn0031403. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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