FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031407 through 18771 annotations produced 2 hits

(CG4270):

Annotation Number : CG4270
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031407
Gbrowse : chr2L:2263463-2264085 (+) // 100.0 //
Probeset : 1633479_a_at
Accessions : protein= NP_608663; /// NP_722786;, nucleotide= NM_134819; /// NM_164471;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031407.
BDGP gene expression has embryonic in situ data for CG4270: 8 pix of staining in 1 body parts.
BioGrid reports that CG4270 interacts with CG7897 .
VDRC has 2 RNAi stocks for FBgn0031407 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.00	Down
Head	0 ± 0	0 of 4	0.00	Down
Eye	2 ± 1	1 of 4	0.05	Down
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.00	Down
Salivary gland	5 ± 2	0 of 4	0.11	Down
Crop	0 ± 0	0 of 4	0.00	Down
Midgut	0 ± 0	0 of 4	0.00	Down
Tubule	0 ± 0	0 of 4	0.00	Down
Hindgut	1 ± 0	0 of 4	0.00	Down
Heart	1 ± 0	0 of 4	0.03	Down
Fat body	2 ± 3	0 of 4	0.04	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	817 ± 32	4 of 4	15.20	Up
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	0 ± 0	0 of 4	0.01	Down
Mated spermatheca	0 ± 0	0 of 4	0.01	Down
Adult carcass	1 ± 0	0 of 4	0.00	Down
Larval CNS	0 ± 0	0 of 4	0.01	Down
Larval Salivary gland	1 ± 0	0 of 4	0.03	Down
Larval midgut	0 ± 0	0 of 4	0.01	Down
Larval tubule	0 ± 0	0 of 4	0.00	Down
Larval hindgut	0 ± 0	0 of 4	0.01	Down
Larval fat body	47 ± 25	1 of 4	0.90	None
Larval trachea	0 ± 0	0 of 4	0.01	Down
Larval carcass	1 ± 1	0 of 4	0.04	Down
S2 cells (growing)	0 ± 0	0 of 4	0.01	Down
Whole fly	53 ± 2	4 of 4

(CG4270):

Annotation Number : CG4270
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031407
Gbrowse : chr2L:2263463-2264239 (+) // 100.0 //
Probeset : 1630972_at
Accessions : protein= NP_608663; /// NP_722786;, nucleotide= NM_134819; /// NM_164471;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031407.
BDGP gene expression has embryonic in situ data for CG4270: 8 pix of staining in 1 body parts.
BioGrid reports that CG4270 interacts with CG7897 .
VDRC has 2 RNAi stocks for FBgn0031407 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	0.00	Down
Head	6 ± 1	0 of 4	0.10	Down
Eye	3 ± 0	0 of 4	0.03	Down
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.00	Down
Salivary gland	8 ± 3	0 of 4	0.08	Down
Crop	8 ± 4	0 of 4	0.10	Down
Midgut	3 ± 1	0 of 4	0.00	Down
Tubule	12 ± 1	2 of 4	0.10	Down
Hindgut	8 ± 3	0 of 4	0.10	Down
Heart	2 ± 1	1 of 4	0.02	Down
Fat body	7 ± 4	1 of 4	0.07	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	1093 ± 37	4 of 4	10.60	Up
Male accessory glands	12 ± 3	0 of 4	0.10	Down
Virgin spermatheca	5 ± 1	0 of 4	0.06	Down
Mated spermatheca	11 ± 3	2 of 4	0.11	Down
Adult carcass	11 ± 5	0 of 4	0.10	Down
Larval CNS	3 ± 1	0 of 4	0.03	Down
Larval Salivary gland	4 ± 1	0 of 4	0.04	Down
Larval midgut	6 ± 1	0 of 4	0.06	Down
Larval tubule	6 ± 3	0 of 4	0.10	Down
Larval hindgut	6 ± 1	1 of 4	0.07	Down
Larval fat body	106 ± 63	3 of 4	1.00	None
Larval trachea	6 ± 8	1 of 4	0.06	Down
Larval carcass	2 ± 0	0 of 4	0.03	Down
S2 cells (growing)	1 ± 0	0 of 4	0.01	Down
Whole fly	103 ± 22	4 of 4

Looking for FBgn0031407. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720