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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031409 through 18771 annotations produced 1 hits



(CG4271):

Annotation Number : CG4271
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031409
Gbrowse : chr2L:2285173-2285902 (+) // 100.0 //
Probeset : 1627138_at
Accessions : protein= NP_608665;, nucleotide= NM_134821;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0031409.
Homophila reports that CG4271 is a close match (4e-11) to human gene CTRC;CLCR (NP_009203), a gene associated with {Pancreatitis, chronic, susceptibilty to}, 167800 (3).
VDRC has 3 RNAi stocks for FBgn0031409 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 12 of 4 0.10Down
Head5 ± 01 of 4 0.20Down
Eye2 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion5 ± 21 of 4 0.10Down
Salivary gland21 ± 24 of 4 0.57Down
Crop10 ± 12 of 4 0.30Down
Midgut9 ± 23 of 4 0.30Down
Tubule9 ± 12 of 4 0.30Down
Hindgut8 ± 01 of 4 0.20Down
Heart3 ± 01 of 4 0.10Down
Fat body11 ± 73 of 4 0.30Down
Ovary6 ± 02 of 4 0.20Down
Testis7 ± 22 of 4 0.20Down
Male accessory glands3705 ± 664 of 496.60Up
Virgin spermatheca25 ± 14 of 4 0.66Down
Mated spermatheca28 ± 74 of 4 0.74None
Adult carcass10 ± 21 of 4 0.30Down
Larval CNS5 ± 03 of 4 0.14Down
Larval Salivary gland5 ± 20 of 4 0.15Down
Larval midgut10 ± 20 of 4 0.27Down
Larval tubule7 ± 11 of 4 0.20Down
Larval hindgut6 ± 12 of 4 0.16Down
Larval fat body14 ± 12 of 4 0.40Down
Larval trachea3 ± 20 of 4 0.09Down
Larval carcass12 ± 01 of 4 0.32Down
S2 cells (growing)6 ± 02 of 4 0.17Down
Whole fly38 ± 24 of 4

Looking for FBgn0031409. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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