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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031412 through 18771 annotations produced 1 hits



(CG16995):

Annotation Number : CG16995
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031412
Gbrowse : chr2L:2308026-2308671 (+) // 100.0 //
Probeset : 1636233_at
Accessions : protein= NP_608668;, nucleotide= NM_134824;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0031412.
BioGrid reports that CG16995 interacts with CG9986 .
VDRC has 2 RNAi stocks for FBgn0031412 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head3 ± 00 of 4 0.20Down
Eye2 ± 00 of 4 0.10Down
Thoracicoabdominal ganglion3 ± 20 of 4 0.20Down
Salivary gland13 ± 30 of 4 0.67None
Crop7 ± 10 of 4 0.40None
Midgut268 ± 134 of 413.20Up
Tubule47 ± 123 of 4 2.30Up
Hindgut254 ± 204 of 412.50Up
Heart3 ± 00 of 4 0.17Down
Fat body7 ± 20 of 4 0.36None
Ovary4 ± 00 of 4 0.20Down
Testis27 ± 24 of 4 1.30None
Male accessory glands11 ± 22 of 4 0.50None
Virgin spermatheca5 ± 10 of 4 0.27Down
Mated spermatheca2 ± 10 of 4 0.13Down
Adult carcass4 ± 10 of 4 0.20Down
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland6 ± 20 of 4 0.33None
Larval midgut642 ± 424 of 431.58Up
Larval tubule540 ± 1384 of 426.50Up
Larval hindgut1635 ± 1064 of 480.37Up
Larval fat body14 ± 30 of 4 0.70None
Larval trachea4 ± 10 of 4 0.21Down
Larval carcass5 ± 10 of 4 0.26Down
S2 cells (growing)7 ± 10 of 4 0.35None
Whole fly20 ± 42 of 4

Looking for FBgn0031412. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime