FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031414 through 18771 annotations produced 4 hits

eyes shut (eys):

Annotation Number : CG15389
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031414
Gbrowse : chr2L:2346407-2347183 (+) // 100.0 //
Probeset : 1627703_at
Accessions : protein= NP_001027571;, nucleotide= NM_001032399;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0031414.
TRiP has 4 RNAi stocks for FBgn0031414 available for purchase.
VDRC has 9 RNAi stocks for FBgn0031414 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	1.30	None
Head	3 ± 1	0 of 4	1.30	None
Eye	2 ± 1	0 of 4	1.01	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	1.90	None
Salivary gland	7 ± 1	0 of 4	3.21	Up
Crop	1 ± 0	0 of 4	0.50	None
Midgut	2 ± 0	0 of 4	1.00	None
Tubule	2 ± 0	0 of 4	0.80	None
Hindgut	1 ± 0	0 of 4	0.50	None
Heart	3 ± 0	0 of 4	1.42	None
Fat body	1 ± 1	0 of 4	0.67	None
Ovary	0 ± 0	0 of 4	0.30	None
Testis	1 ± 0	0 of 4	0.50	None
Male accessory glands	2 ± 0	0 of 4	1.00	None
Virgin spermatheca	3 ± 1	0 of 4	1.33	None
Mated spermatheca	2 ± 1	0 of 4	1.21	None
Adult carcass	2 ± 0	0 of 4	0.90	None
Larval CNS	0 ± 0	0 of 4	0.33	None
Larval Salivary gland	2 ± 1	0 of 4	1.25	None
Larval midgut	5 ± 2	0 of 4	2.36	None
Larval tubule	1 ± 0	0 of 4	0.60	None
Larval hindgut	1 ± 0	0 of 4	0.57	None
Larval fat body	2 ± 1	0 of 4	1.30	None
Larval trachea	2 ± 1	0 of 4	0.87	None
Larval carcass	2 ± 0	0 of 4	1.18	None
S2 cells (growing)	1 ± 0	0 of 4	0.50	None
Whole fly	2 ± 0	0 of 4

eyes shut (eys):

Annotation Number : HDC00367
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031414
Gbrowse : chr2L:2323514-2324815 (+) // 100.0 //
Probeset : 1630032_at
Accessions : protein= NP_001027571;, nucleotide= NM_001032399;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0031414.
TRiP has 4 RNAi stocks for FBgn0031414 available for purchase.
VDRC has 9 RNAi stocks for FBgn0031414 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	0 of 4	4.50	Up
Head	4 ± 1	0 of 4	3.10	None
Eye	29 ± 3	4 of 4	20.60	Up
Thoracicoabdominal ganglion	7 ± 0	0 of 4	5.60	Up
Salivary gland	7 ± 2	0 of 4	5.25	None
Crop	5 ± 2	0 of 4	3.90	None
Midgut	3 ± 1	0 of 4	2.10	None
Tubule	2 ± 0	0 of 4	1.70	Up
Hindgut	1 ± 0	0 of 4	1.20	None
Heart	0 ± 0	0 of 4	0.53	None
Fat body	2 ± 0	0 of 4	1.60	Up
Ovary	1 ± 0	0 of 4	1.10	None
Testis	2 ± 0	0 of 4	1.80	None
Male accessory glands	2 ± 2	0 of 4	2.10	None
Virgin spermatheca	1 ± 0	0 of 4	1.14	None
Mated spermatheca	4 ± 1	0 of 4	2.91	None
Adult carcass	3 ± 0	0 of 4	2.40	None
Larval CNS	1 ± 0	0 of 4	0.93	None
Larval Salivary gland	1 ± 0	0 of 4	1.02	None
Larval midgut	2 ± 0	0 of 4	1.82	None
Larval tubule	2 ± 1	0 of 4	2.00	None
Larval hindgut	1 ± 0	0 of 4	0.96	None
Larval fat body	2 ± 1	0 of 4	1.90	None
Larval trachea	1 ± 0	0 of 4	0.77	None
Larval carcass	1 ± 0	0 of 4	0.93	None
S2 cells (growing)	1 ± 0	0 of 4	1.05	None
Whole fly	1 ± 0	0 of 4

eyes shut (eys):

Annotation Number : CG15388
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031414
Gbrowse : chr2L:2337963-2341109 (+) // 100.0 //
Probeset : 1632560_at
Accessions : protein= NP_001027571;, nucleotide= NM_001032399;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0031414.
TRiP has 4 RNAi stocks for FBgn0031414 available for purchase.
VDRC has 9 RNAi stocks for FBgn0031414 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	1.10	None
Head	1 ± 0	0 of 4	0.80	None
Eye	4 ± 3	1 of 4	1.92	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.40	None
Salivary gland	4 ± 1	0 of 4	1.72	None
Crop	2 ± 1	0 of 4	1.10	None
Midgut	1 ± 0	0 of 4	0.40	None
Tubule	4 ± 0	0 of 4	1.60	None
Hindgut	4 ± 1	0 of 4	1.70	None
Heart	3 ± 0	0 of 4	1.31	None
Fat body	4 ± 3	0 of 4	1.97	None
Ovary	1 ± 0	0 of 4	0.60	None
Testis	2 ± 0	0 of 4	1.10	None
Male accessory glands	1 ± 0	0 of 4	0.80	None
Virgin spermatheca	1 ± 0	0 of 4	0.58	None
Mated spermatheca	0 ± 0	0 of 4	0.35	None
Adult carcass	2 ± 0	0 of 4	1.00	None
Larval CNS	1 ± 0	0 of 4	0.45	None
Larval Salivary gland	11 ± 3	0 of 4	4.52	None
Larval midgut	1 ± 0	0 of 4	0.70	None
Larval tubule	1 ± 0	0 of 4	0.60	None
Larval hindgut	7 ± 2	0 of 4	2.91	None
Larval fat body	7 ± 2	0 of 4	3.20	None
Larval trachea	5 ± 3	0 of 4	2.44	None
Larval carcass	1 ± 0	0 of 4	0.59	None
S2 cells (growing)	1 ± 0	0 of 4	0.66	None
Whole fly	2 ± 0	0 of 4

eyes shut (eys):

Annotation Number : CG7245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031414
Gbrowse : chr2L:2350651-2358174 (+) // 99.8 //
Probeset : 1633714_at
Accessions : protein= NP_001027571;, nucleotide= NM_001032399;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0031414.
TRiP has 4 RNAi stocks for FBgn0031414 available for purchase.
VDRC has 9 RNAi stocks for FBgn0031414 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	191 ± 7	4 of 4	10.80	Up
Head	123 ± 21	4 of 4	6.90	Up
Eye	763 ± 141	4 of 4	43.06	Up
Thoracicoabdominal ganglion	134 ± 12	4 of 4	7.60	Up
Salivary gland	4 ± 0	0 of 4	0.27	Down
Crop	7 ± 1	0 of 4	0.40	Down
Midgut	5 ± 2	1 of 4	0.30	Down
Tubule	4 ± 1	0 of 4	0.30	Down
Hindgut	8 ± 1	2 of 4	0.50	Down
Heart	2 ± 1	0 of 4	0.12	Down
Fat body	9 ± 4	2 of 4	0.53	Down
Ovary	3 ± 1	0 of 4	0.20	Down
Testis	20 ± 0	4 of 4	1.20	None
Male accessory glands	8 ± 4	0 of 4	0.40	None
Virgin spermatheca	2 ± 0	0 of 4	0.12	Down
Mated spermatheca	4 ± 1	0 of 4	0.23	Down
Adult carcass	11 ± 1	0 of 4	0.60	Down
Larval CNS	32 ± 2	4 of 4	1.85	Up
Larval Salivary gland	7 ± 2	0 of 4	0.43	Down
Larval midgut	6 ± 1	0 of 4	0.39	Down
Larval tubule	10 ± 1	0 of 4	0.60	Down
Larval hindgut	4 ± 2	0 of 4	0.27	Down
Larval fat body	8 ± 3	1 of 4	0.50	None
Larval trachea	7 ± 12	0 of 4	0.43	None
Larval carcass	3 ± 1	0 of 4	0.21	Down
S2 cells (growing)	8 ± 0	0 of 4	0.46	Down
Whole fly	17 ± 1	3 of 4

Looking for FBgn0031414. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720