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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031417 through 18771 annotations produced 1 hits


Annotation Number : CG3597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031417
Gbrowse : chr2L:2370155-2371524 (-) // 100.0 //
Probeset : 1628013_at
Accessions : protein= NP_608674;, nucleotide= NM_134830;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0031417.
BDGP gene expression has embryonic in situ data for CG3597: 30 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0031417 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 14 of 4 0.10Down
Head507 454 of 4 2.90Up
Eye197 484 of 4 1.12None
Thoracicoabdominal ganglion25 44 of 4 0.10Down
Salivary gland15 21 of 4 0.09Down
Crop25 44 of 4 0.10Down
Midgut32 24 of 4 0.20Down
Tubule473 814 of 4 2.70Up
Hindgut80 44 of 4 0.50Down
Heart847 404 of 4 4.79Up
Fat body2074 3554 of 411.73Up
Ovary1 00 of 4 0.00Down
Testis9 03 of 4 0.10Down
Male accessory glands9 10 of 4 0.10Down
Virgin spermatheca2235 964 of 412.64Up
Mated spermatheca1940 1614 of 410.97Up
Adult carcass1231 354 of 4 7.00Up
Larval CNS3 10 of 4 0.02Down
Larval Salivary gland8 22 of 4 0.05Down
Larval midgut8 20 of 4 0.05Down
Larval tubule5 10 of 4 0.00Down
Larval hindgut7 21 of 4 0.04Down
Larval fat body147 144 of 4 0.80None
Larval trachea7 32 of 4 0.04Down
Larval carcass4 10 of 4 0.03Down
S2 cells (growing)3 10 of 4 0.02Down
Whole fly176 124 of 4

Looking for FBgn0031417. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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