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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031422 through 18771 annotations produced 1 hits



(CG9870):

Annotation Number : CG9870
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031422
Gbrowse : chr2L:2383298-2384731 (+) // 100.0 //
Probeset : 1630955_at
Accessions : protein= NP_608679;, nucleotide= NM_134835;
Pathway : 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016021 // integral to membrane //
Interpro : "0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infer
FlyMine data for FBgn0031422.
VDRC has 2 RNAi stocks for FBgn0031422 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 44 of 4 0.90None
Head45 24 of 4 0.70Down
Eye56 24 of 4 0.89None
Thoracicoabdominal ganglion81 24 of 4 1.30Up
Salivary gland57 44 of 4 0.90None
Crop59 04 of 4 0.90Down
Midgut53 24 of 4 0.80Down
Tubule71 44 of 4 1.10None
Hindgut53 44 of 4 0.80None
Heart42 34 of 4 0.67Down
Fat body36 74 of 4 0.57Down
Ovary132 14 of 4 2.10Up
Testis26 14 of 4 0.40Down
Male accessory glands104 24 of 4 1.60Up
Virgin spermatheca65 34 of 4 1.02None
Mated spermatheca81 24 of 4 1.27Up
Adult carcass36 44 of 4 0.60Down
Larval CNS98 54 of 4 1.54Up
Larval Salivary gland129 54 of 4 2.01Up
Larval midgut54 24 of 4 0.85Down
Larval tubule71 14 of 4 1.10Up
Larval hindgut64 14 of 4 1.00None
Larval fat body56 24 of 4 0.90None
Larval trachea94 64 of 4 1.47Up
Larval carcass63 64 of 4 0.99None
S2 cells (growing)44 14 of 4 0.70Down
Whole fly64 04 of 4

Looking for FBgn0031422. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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