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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031423 through 18771 annotations produced 1 hits



(CG3557):

Annotation Number : CG3557
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031423
Gbrowse : chr2L:2384760-2385792 (-) // 100.0 //
Probeset : 1625904_at
Accessions : protein= NP_608680;, nucleotide= NM_134836;
FlyMine data for FBgn0031423.
BDGP gene expression has embryonic in situ data for CG3557: 8 pix of staining in 1 body parts.
BioGrid reports that CG3557 interacts with CG4896 CG6667 CG7664 CG9283 CG9480 CG9911 .
VDRC has 4 RNAi stocks for FBgn0031423 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 00 of 4 0.10Down
Head4 ± 30 of 4 0.10Down
Eye3 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion11 ± 10 of 4 0.10Down
Salivary gland4 ± 00 of 4 0.05Down
Crop10 ± 20 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut6 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.02Down
Fat body9 ± 10 of 4 0.10Down
Ovary2 ± 00 of 4 0.00Down
Testis802 ± 304 of 4 9.00Up
Male accessory glands6 ± 20 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.06Down
Mated spermatheca4 ± 10 of 4 0.05Down
Adult carcass20 ± 60 of 4 0.20Down
Larval CNS6 ± 10 of 4 0.07Down
Larval Salivary gland3 ± 10 of 4 0.04Down
Larval midgut5 ± 20 of 4 0.06Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.03Down
Larval fat body101 ± 443 of 4 1.10None
Larval trachea4 ± 30 of 4 0.05Down
Larval carcass7 ± 20 of 4 0.08Down
S2 cells (growing)3 ± 00 of 4 0.04Down
Whole fly88 ± 54 of 4

Looking for FBgn0031423. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime