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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031426 through 18771 annotations produced 1 hits



(CG18641):

Annotation Number : CG18641
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031426
Gbrowse : chr2L:2410883-2412129 (-) // 100.0 //
Probeset : 1623834_at
Accessions : protein= NP_608682;, nucleotide= NM_134838;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0016298 // lipase activity // inferred from seq
FlyMine data for FBgn0031426.
Homophila reports that CG18641 is a close match (3e-15) to human gene HDLCQ11;LIPD;LPL (NP_000228), a gene associated with Combined hyperlipidemia, familial, 144250 (3);Lipoprotein lipase deficiency, 238600 (3);[High density lipoprotein cholesterol level QTL 11] (3).
TRiP has 1 RNAi stocks for FBgn0031426 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031426 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head5 10 of 4 0.80None
Eye7 22 of 4 1.22None
Thoracicoabdominal ganglion1 00 of 4 0.20Down
Salivary gland1 00 of 4 0.25Down
Crop21 24 of 4 3.30Up
Midgut1 00 of 4 0.20Down
Tubule1 00 of 4 0.30Down
Hindgut10 12 of 4 1.70None
Heart6 01 of 4 1.07None
Fat body7 31 of 4 1.24None
Ovary2 10 of 4 0.40None
Testis45 34 of 4 7.20Up
Male accessory glands10 30 of 4 1.60None
Virgin spermatheca3 10 of 4 0.57None
Mated spermatheca6 10 of 4 0.94None
Adult carcass8 20 of 4 1.40None
Larval CNS2 10 of 4 0.34None
Larval Salivary gland1 10 of 4 0.29None
Larval midgut2 00 of 4 0.34None
Larval tubule1 00 of 4 0.20Down
Larval hindgut11 11 of 4 1.74None
Larval fat body3 10 of 4 0.50None
Larval trachea34 74 of 4 5.46Up
Larval carcass8 21 of 4 1.37None
S2 cells (growing)2 00 of 4 0.43None
Whole fly6 10 of 4

Looking for FBgn0031426. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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