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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031428 through 18771 annotations produced 1 hits



(CG9886):

Annotation Number : CG9886
Flybase ID : FBgn0031428
Gbrowse : chr2L:2420807-2422915 (+) // 100.0 //
Probeset : 1636932_at
Accessions : protein= NP_608684;, nucleotide= NM_134840;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electr
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0031428.
BDGP gene expression has embryonic in situ data for CG9886: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0031428 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 24 of 4 1.20None
Head137 84 of 4 2.10Up
Eye72 64 of 4 1.12None
Thoracicoabdominal ganglion64 14 of 4 1.00None
Salivary gland57 64 of 4 0.89None
Crop57 14 of 4 0.90None
Midgut67 14 of 4 1.00None
Tubule209 84 of 4 3.20Up
Hindgut59 44 of 4 0.90None
Heart388 244 of 4 5.98Up
Fat body573 234 of 4 8.82Up
Ovary15 24 of 4 0.20Down
Testis14 14 of 4 0.20Down
Male accessory glands88 54 of 4 1.40Up
Virgin spermatheca449 494 of 4 6.92Up
Mated spermatheca331 164 of 4 5.11Up
Adult carcass279 154 of 4 4.30Up
Larval CNS44 54 of 4 0.69Down
Larval Salivary gland29 44 of 4 0.46Down
Larval midgut77 34 of 4 1.20None
Larval tubule159 44 of 4 2.50Up
Larval hindgut42 14 of 4 0.66Down
Larval fat body177 164 of 4 2.70Up
Larval trachea48 44 of 4 0.75None
Larval carcass61 34 of 4 0.94None
S2 cells (growing)31 14 of 4 0.48Down
Whole fly65 54 of 4

Looking for FBgn0031428. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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