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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031432 through 18771 annotations produced 1 hits



Cyp309a1 (Cyp309a1):

Annotation Number : CG9964
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031432
Gbrowse : chr2L:2562904-2564848 (-) // 100.0 //
Probeset : 1626324_at
Accessions : protein= NP_608688;, nucleotide= NM_134844;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0031432.
BDGP gene expression has embryonic in situ data for Cyp309a1: 9 pix of staining in 3 body parts.
Homophila reports that CG9964 is a close match (2e-15) to human gene CYP5;GHOSAL;TBXAS1 (NP_001052), a gene associated with Ghosal syndrome, 231095 (3);Thromboxane synthase deficiency (2).
VDRC has 2 RNAi stocks for FBgn0031432 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 11 of 4 0.40None
Head153 ± 164 of 4 4.10Up
Eye78 ± 274 of 4 2.11None
Thoracicoabdominal ganglion9 ± 20 of 4 0.30Down
Salivary gland5 ± 10 of 4 0.13Down
Crop5 ± 10 of 4 0.20Down
Midgut522 ± 154 of 414.00Up
Tubule7 ± 00 of 4 0.20Down
Hindgut6 ± 10 of 4 0.20Down
Heart114 ± 114 of 4 3.06Up
Fat body113 ± 344 of 4 3.03Up
Ovary1 ± 00 of 4 0.00Down
Testis4 ± 10 of 4 0.10Down
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca222 ± 264 of 4 5.97Up
Mated spermatheca44 ± 84 of 4 1.20None
Adult carcass81 ± 34 of 4 2.20Up
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland2 ± 00 of 4 0.07Down
Larval midgut81 ± 44 of 4 2.18Up
Larval tubule63 ± 134 of 4 1.70None
Larval hindgut8 ± 21 of 4 0.22Down
Larval fat body1265 ± 2294 of 434.00Up
Larval trachea5 ± 31 of 4 0.15Down
Larval carcass5 ± 10 of 4 0.14Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly37 ± 84 of 4

Looking for FBgn0031432. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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