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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031435 through 18771 annotations produced 1 hits


Annotation Number : CG9883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031435
Gbrowse : chr2L:2577670-2579180 (+) // 100.0 //
Probeset : 1626264_at
Accessions : protein= NP_608691;, nucleotide= NM_134847;
FlyMine data for FBgn0031435.
BDGP gene expression has embryonic in situ data for CG9883: 58 pix of staining in 12 body parts.
VDRC has 2 RNAi stocks for FBgn0031435 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head2 00 of 4 0.00Down
Eye2 10 of 4 0.02Down
Thoracicoabdominal ganglion4 10 of 4 0.00Down
Salivary gland2 00 of 4 0.02Down
Crop6 10 of 4 0.00Down
Midgut4 10 of 4 0.00Down
Tubule23 23 of 4 0.20Down
Hindgut3 00 of 4 0.00Down
Heart2 00 of 4 0.02Down
Fat body2 20 of 4 0.02Down
Ovary454 224 of 4 3.10Up
Testis20 14 of 4 0.10Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca3 10 of 4 0.02Down
Mated spermatheca4 10 of 4 0.03Down
Adult carcass9 40 of 4 0.10Down
Larval CNS12 04 of 4 0.08Down
Larval Salivary gland2 00 of 4 0.01Down
Larval midgut3 10 of 4 0.02Down
Larval tubule63 14 of 4 0.40Down
Larval hindgut3 10 of 4 0.03Down
Larval fat body9 10 of 4 0.10Down
Larval trachea6 40 of 4 0.04Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)2 10 of 4 0.01Down
Whole fly147 114 of 4

Looking for FBgn0031435. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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