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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031436 through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase B17.2 (CG3214):

Annotation Number : CG3214
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031436
Gbrowse : chr2L:2579243-2579958 (-) // 100.0 //
Probeset : 1625655_at
Accessions : protein= NP_001137770; /// NP_608692;, nucleotide= NM_001144298; /// NM_134848;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity"
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity /// 0016020 // m
FlyMine data for FBgn0031436.
BioGrid reports that CG3214 interacts with CG5675 .
TRiP has 1 RNAi stocks for FBgn0031436 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031436 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1195 214 of 4 1.40Up
Head1086 304 of 4 1.30Up
Eye1317 544 of 4 1.55Up
Thoracicoabdominal ganglion1231 484 of 4 1.40Up
Salivary gland1091 354 of 4 1.28Up
Crop657 364 of 4 0.80Down
Midgut866 274 of 4 1.00None
Tubule358 164 of 4 0.40Down
Hindgut1213 124 of 4 1.40Up
Heart1153 364 of 4 1.36Up
Fat body1189 1094 of 4 1.40Up
Ovary358 114 of 4 0.40Down
Testis440 214 of 4 0.50Down
Male accessory glands411 174 of 4 0.50Down
Virgin spermatheca370 184 of 4 0.44Down
Mated spermatheca357 284 of 4 0.42Down
Adult carcass1732 374 of 4 2.00Up
Larval CNS615 454 of 4 0.72Down
Larval Salivary gland629 204 of 4 0.74Down
Larval midgut623 194 of 4 0.73Down
Larval tubule691 684 of 4 0.80None
Larval hindgut965 304 of 4 1.13None
Larval fat body326 214 of 4 0.40Down
Larval trachea603 234 of 4 0.71Down
Larval carcass906 934 of 4 1.07None
S2 cells (growing)382 94 of 4 0.45Down
Whole fly851 464 of 4

Looking for FBgn0031436. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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