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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031444 through 18771 annotations produced 1 hits



(CG9879):

Annotation Number : CG9879
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031444
Gbrowse : chr2L:2665109-2666195 (+) // 100.0 //
Probeset : 1630787_at
Accessions : protein= NP_608699;, nucleotide= NM_134855;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II pro
FlyMine data for FBgn0031444.
VDRC has 1 RNAi stocks for FBgn0031444 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head4 ± 20 of 4 0.20Down
Eye4 ± 00 of 4 0.16Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.20Down
Salivary gland9 ± 20 of 4 0.35Down
Crop13 ± 31 of 4 0.50Down
Midgut10 ± 20 of 4 0.40Down
Tubule2 ± 00 of 4 0.10Down
Hindgut5 ± 30 of 4 0.20Down
Heart3 ± 10 of 4 0.15Down
Fat body7 ± 40 of 4 0.27Down
Ovary4 ± 10 of 4 0.20Down
Testis283 ± 54 of 410.40Up
Male accessory glands5 ± 10 of 4 0.20Down
Virgin spermatheca6 ± 21 of 4 0.22Down
Mated spermatheca7 ± 01 of 4 0.29Down
Adult carcass17 ± 40 of 4 0.60None
Larval CNS4 ± 30 of 4 0.18Down
Larval Salivary gland2 ± 00 of 4 0.10Down
Larval midgut9 ± 20 of 4 0.34Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.12Down
Larval fat body36 ± 154 of 4 1.30None
Larval trachea6 ± 11 of 4 0.25Down
Larval carcass6 ± 10 of 4 0.24Down
S2 cells (growing)3 ± 00 of 4 0.13Down
Whole fly27 ± 34 of 4

Looking for FBgn0031444. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime