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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031450 through 18771 annotations produced 1 hits



Hepatocyte growth factor regulated tyrosine kinase substrate (Hrs):

Annotation Number : CG2903
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031450
Gbrowse : chr2L:2739985-2743377 (+) // 100.0 //
Probeset : 1630393_a_at
Accessions : protein= NP_001137771; /// NP_525099; /// NP_722830; /// NP_722831;, nucleotide= NM_001144299; /// NM_080360; /// NM_164496; /// NM_164497;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // non-traceable author
FlyMine data for FBgn0031450.
BioGrid reports that CG2903 interacts with CG31040 CG6521 CG2934 CG4389 CG7583 .
TRiP has 3 RNAi stocks for FBgn0031450 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 44 of 4 1.70Up
Head183 74 of 4 1.60Up
Eye322 194 of 4 2.89Up
Thoracicoabdominal ganglion179 64 of 4 1.60Up
Salivary gland202 34 of 4 1.81Up
Crop132 74 of 4 1.20None
Midgut178 94 of 4 1.60Up
Tubule109 44 of 4 1.00None
Hindgut113 24 of 4 1.00None
Heart88 114 of 4 0.79None
Fat body96 94 of 4 0.86Down
Ovary192 44 of 4 1.70Up
Testis126 104 of 4 1.10None
Male accessory glands125 74 of 4 1.10None
Virgin spermatheca80 64 of 4 0.72Down
Mated spermatheca83 24 of 4 0.75Down
Adult carcass110 84 of 4 1.00None
Larval CNS182 94 of 4 1.63Up
Larval Salivary gland211 114 of 4 1.89Up
Larval midgut368 534 of 4 3.30Up
Larval tubule581 214 of 4 5.20Up
Larval hindgut321 344 of 4 2.87Up
Larval fat body393 394 of 4 3.50Up
Larval trachea132 64 of 4 1.18Up
Larval carcass209 484 of 4 1.87None
S2 cells (growing)435 134 of 4 3.89Up
Whole fly111 14 of 4

Looking for FBgn0031450. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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