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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031451 through 18771 annotations produced 1 hits



(CG9961):

Annotation Number : CG9961
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031451
Gbrowse : chr2L:2743365-2744934 (-) // 100.0 //
Probeset : 1638121_at
Accessions : protein= NP_608704;, nucleotide= NM_134860;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004618 // phosphoglycerate kinase activity // inferred from sequence or structural similarity /// 0004618 // phosphogly
FlyMine data for FBgn0031451.
Homophila reports that CG9961 is a close match (4e-137) to human gene PGK1;PGKA (NP_000282), a gene associated with Phosphoglycerate kinase 1 deficiency, 300653 (3).
TRiP has 1 RNAi stocks for FBgn0031451 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031451 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head7 ± 02 of 4 0.10Down
Eye8 ± 12 of 4 0.18Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland17 ± 40 of 4 0.37Down
Crop3 ± 20 of 4 0.10Down
Midgut8 ± 00 of 4 0.20Down
Tubule6 ± 11 of 4 0.10Down
Hindgut8 ± 12 of 4 0.20Down
Heart6 ± 12 of 4 0.15Down
Fat body4 ± 20 of 4 0.09Down
Ovary4 ± 10 of 4 0.10Down
Testis508 ± 134 of 410.90Up
Male accessory glands9 ± 30 of 4 0.20Down
Virgin spermatheca8 ± 11 of 4 0.18Down
Mated spermatheca10 ± 11 of 4 0.22Down
Adult carcass10 ± 21 of 4 0.20Down
Larval CNS15 ± 24 of 4 0.32Down
Larval Salivary gland7 ± 11 of 4 0.15Down
Larval midgut6 ± 20 of 4 0.14Down
Larval tubule8 ± 01 of 4 0.20Down
Larval hindgut6 ± 13 of 4 0.13Down
Larval fat body89 ± 354 of 4 1.90None
Larval trachea4 ± 30 of 4 0.11Down
Larval carcass8 ± 10 of 4 0.18Down
S2 cells (growing)17 ± 13 of 4 0.36Down
Whole fly46 ± 24 of 4

Looking for FBgn0031451. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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