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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031452 through 18771 annotations produced 1 hits

CG2843 (Cwc25):

Annotation Number : CG2843
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031452
Gbrowse : chr2L:2745101-2746944 (+) // 100.0 //
Probeset : 1630931_at
Accessions : protein= NP_608705;, nucleotide= NM_134861;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031452.
BioGrid reports that CG2843 interacts with CG3294 CG3542 CG4877 CG6340 CG6843 CG3971 CG4510 CG8507 CG8801 CG31762 .
TRiP has 1 RNAi stocks for FBgn0031452 available for purchase.
VDRC has 4 RNAi stocks for FBgn0031452 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 54 of 4 0.90None
Head29 14 of 4 0.30Down
Eye38 34 of 4 0.46Down
Thoracicoabdominal ganglion46 44 of 4 0.60Down
Salivary gland52 44 of 4 0.62Down
Crop36 34 of 4 0.40Down
Midgut50 24 of 4 0.60Down
Tubule41 04 of 4 0.50Down
Hindgut38 24 of 4 0.50Down
Heart24 24 of 4 0.29Down
Fat body32 44 of 4 0.39Down
Ovary210 64 of 4 2.50Up
Testis37 24 of 4 0.40Down
Male accessory glands69 44 of 4 0.80None
Virgin spermatheca35 34 of 4 0.42Down
Mated spermatheca41 64 of 4 0.49Down
Adult carcass24 33 of 4 0.30Down
Larval CNS111 154 of 4 1.32Up
Larval Salivary gland71 14 of 4 0.85None
Larval midgut40 24 of 4 0.48Down
Larval tubule38 14 of 4 0.40Down
Larval hindgut39 34 of 4 0.46Down
Larval fat body31 03 of 4 0.40Down
Larval trachea76 54 of 4 0.90None
Larval carcass65 24 of 4 0.77Down
S2 cells (growing)92 54 of 4 1.10None
Whole fly84 54 of 4

Looking for FBgn0031452. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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