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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031453 through 18771 annotations produced 1 hits



(CG9894):

Annotation Number : CG9894
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031453
Gbrowse : chr2L:2752798-2756606 (+) // 100.0 //
Probeset : 1628814_s_at
Accessions : protein= NP_608706; /// NP_722833;, nucleotide= NM_134862; /// NM_164498;
Pathway : 0005634 // nucleus // inferred from direct assay
FlyMine data for FBgn0031453.
BDGP gene expression has embryonic in situ data for CG9894: 14 pix of staining in 8 body parts.
VDRC has 1 RNAi stocks for FBgn0031453 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2613 ± 554 of 4 2.20Up
Head1940 ± 804 of 4 1.60Up
Eye2886 ± 964 of 4 2.45Up
Thoracicoabdominal ganglion1650 ± 1224 of 4 1.40Up
Salivary gland1119 ± 464 of 4 0.95None
Crop1867 ± 384 of 4 1.60Up
Midgut745 ± 214 of 4 0.60Down
Tubule1163 ± 1204 of 4 1.00None
Hindgut1574 ± 124 of 4 1.30Up
Heart2544 ± 1344 of 4 2.16Up
Fat body1811 ± 1944 of 4 1.54Up
Ovary1173 ± 174 of 4 1.00None
Testis112 ± 24 of 4 0.10Down
Male accessory glands1336 ± 334 of 4 1.10Up
Virgin spermatheca2519 ± 1084 of 4 2.14Up
Mated spermatheca1972 ± 804 of 4 1.67Up
Adult carcass1620 ± 844 of 4 1.40Up
Larval CNS2394 ± 1134 of 4 2.03Up
Larval Salivary gland483 ± 294 of 4 0.41Down
Larval midgut606 ± 334 of 4 0.52Down
Larval tubule1641 ± 504 of 4 1.40Up
Larval hindgut1055 ± 314 of 4 0.90Down
Larval fat body2820 ± 3284 of 4 2.40Up
Larval trachea2737 ± 974 of 4 2.32Up
Larval carcass866 ± 594 of 4 0.74Down
S2 cells (growing)2327 ± 594 of 4 1.98Up
Whole fly1178 ± 314 of 4

Looking for FBgn0031453. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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