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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031456 through 18771 annotations produced 1 hits



Transportin-Serine/Arginine rich (Trn-SR):

Annotation Number : CG2848
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031456
Gbrowse : chr2L:2759914-2763610 (+) // 100.0 //
Probeset : 1630732_at
Accessions : protein= NP_608708;, nucleotide= NM_134864;
Pathway : via spliceosome // inferred from physical interaction"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
FlyMine data for FBgn0031456.
BioGrid reports that CG2848 interacts with CG3612 CG5940 .
TRiP has 1 RNAi stocks for FBgn0031456 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031456 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain101 34 of 4 1.40Up
Head65 44 of 4 0.90None
Eye62 34 of 4 0.90None
Thoracicoabdominal ganglion103 34 of 4 1.50Up
Salivary gland153 104 of 4 2.20Up
Crop87 44 of 4 1.20None
Midgut46 64 of 4 0.70None
Tubule64 14 of 4 0.90Down
Hindgut58 14 of 4 0.80None
Heart45 14 of 4 0.66None
Fat body76 114 of 4 1.10None
Ovary198 54 of 4 2.80Up
Testis21 24 of 4 0.30Down
Male accessory glands108 44 of 4 1.50Up
Virgin spermatheca94 74 of 4 1.36None
Mated spermatheca126 124 of 4 1.80Up
Adult carcass47 34 of 4 0.70None
Larval CNS143 114 of 4 2.05Up
Larval Salivary gland129 54 of 4 1.85Up
Larval midgut57 34 of 4 0.82None
Larval tubule75 04 of 4 1.10None
Larval hindgut76 14 of 4 1.09None
Larval fat body68 44 of 4 1.00None
Larval trachea72 64 of 4 1.04None
Larval carcass78 24 of 4 1.13None
S2 cells (growing)71 14 of 4 1.02None
Whole fly69 84 of 4

Looking for FBgn0031456. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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