FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031456 through 18771 annotations produced 1 hits

Transportin-Serine/Arginine rich (Trn-SR):

Annotation Number : CG2848
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031456
Gbrowse : chr2L:2759914-2763610 (+) // 100.0 //
Probeset : 1630732_at
Accessions : protein= NP_608708;, nucleotide= NM_134864;
Pathway : via spliceosome // inferred from physical interaction"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
FlyMine data for FBgn0031456.
BioGrid reports that CG2848 interacts with CG3612 CG5940 .
TRiP has 1 RNAi stocks for FBgn0031456 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031456 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	101 ± 3	4 of 4	1.40	Up
Head	65 ± 4	4 of 4	0.90	None
Eye	62 ± 3	4 of 4	0.90	None
Thoracicoabdominal ganglion	103 ± 3	4 of 4	1.50	Up
Salivary gland	153 ± 10	4 of 4	2.20	Up
Crop	87 ± 4	4 of 4	1.20	None
Midgut	46 ± 6	4 of 4	0.70	None
Tubule	64 ± 1	4 of 4	0.90	Down
Hindgut	58 ± 1	4 of 4	0.80	None
Heart	45 ± 1	4 of 4	0.66	None
Fat body	76 ± 11	4 of 4	1.10	None
Ovary	198 ± 5	4 of 4	2.80	Up
Testis	21 ± 2	4 of 4	0.30	Down
Male accessory glands	108 ± 4	4 of 4	1.50	Up
Virgin spermatheca	94 ± 7	4 of 4	1.36	None
Mated spermatheca	126 ± 12	4 of 4	1.80	Up
Adult carcass	47 ± 3	4 of 4	0.70	None
Larval CNS	143 ± 11	4 of 4	2.05	Up
Larval Salivary gland	129 ± 5	4 of 4	1.85	Up
Larval midgut	57 ± 3	4 of 4	0.82	None
Larval tubule	75 ± 0	4 of 4	1.10	None
Larval hindgut	76 ± 1	4 of 4	1.09	None
Larval fat body	68 ± 4	4 of 4	1.00	None
Larval trachea	72 ± 6	4 of 4	1.04	None
Larval carcass	78 ± 2	4 of 4	1.13	None
S2 cells (growing)	71 ± 1	4 of 4	1.02	None
Whole fly	69 ± 8	4 of 4

Looking for FBgn0031456. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720