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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031459 through 18771 annotations produced 1 hits



(CG2862):

Annotation Number : CG2862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031459
Gbrowse : chr2L:2770136-2770904 (+) // 100.0 //
Probeset : 1632642_a_at
Accessions : protein= NP_608711; /// NP_722836;, nucleotide= NM_134867; /// NM_164500;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008252 // nucleotidase activity // inferred fr
FlyMine data for FBgn0031459.
BioGrid reports that CG2862 interacts with CG7109 .
VDRC has 1 RNAi stocks for FBgn0031459 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain461 124 of 4 0.70Down
Head955 534 of 4 1.50Up
Eye798 174 of 4 1.29Up
Thoracicoabdominal ganglion427 204 of 4 0.70Down
Salivary gland861 64 of 4 1.39Up
Crop607 164 of 4 1.00None
Midgut825 224 of 4 1.30Up
Tubule833 74 of 4 1.30Up
Hindgut676 114 of 4 1.10None
Heart997 424 of 4 1.61Up
Fat body1414 604 of 4 2.29Up
Ovary667 84 of 4 1.10None
Testis471 134 of 4 0.80Down
Male accessory glands1203 234 of 4 1.90Up
Virgin spermatheca1169 184 of 4 1.89Up
Mated spermatheca1096 304 of 4 1.77Up
Adult carcass918 184 of 4 1.50Up
Larval CNS956 224 of 4 1.55Up
Larval Salivary gland1529 334 of 4 2.47Up
Larval midgut530 234 of 4 0.86None
Larval tubule938 184 of 4 1.50Up
Larval hindgut644 44 of 4 1.04None
Larval fat body925 794 of 4 1.50Up
Larval trachea981 954 of 4 1.59Up
Larval carcass674 354 of 4 1.09None
S2 cells (growing)878 214 of 4 1.42Up
Whole fly618 284 of 4

Looking for FBgn0031459. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime