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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031466 through 18771 annotations produced 2 hits



(CG3119):

Annotation Number : CG3119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031466
Gbrowse : chr2L:2834966-2837831 (-) // 100.0 //
Probeset : 1638081_at
Accessions : protein= NP_608717; /// NP_722845;, nucleotide= NM_134873; /// NM_164504;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0016757 // transferase activity
FlyMine data for FBgn0031466.
Homophila reports that CG3119 is a close match (4e-14) to human gene C1GALT1C1;C1GALT2;COSMC (NP_689905), a gene associated with Tn syndrome, 300622 (3).
VDRC has 2 RNAi stocks for FBgn0031466 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.90None
Head11 12 of 4 3.30Up
Eye3 00 of 4 1.05None
Thoracicoabdominal ganglion4 20 of 4 1.30None
Salivary gland14 40 of 4 4.34None
Crop6 10 of 4 1.80None
Midgut6 00 of 4 1.90None
Tubule2 00 of 4 0.70Down
Hindgut5 10 of 4 1.60None
Heart2 00 of 4 0.66None
Fat body6 20 of 4 1.85None
Ovary3 00 of 4 0.90None
Testis4 00 of 4 1.20None
Male accessory glands7 21 of 4 2.30None
Virgin spermatheca3 10 of 4 1.01None
Mated spermatheca1 00 of 4 0.36None
Adult carcass11 20 of 4 3.30None
Larval CNS2 10 of 4 0.75None
Larval Salivary gland7 10 of 4 2.16None
Larval midgut6 22 of 4 1.79None
Larval tubule2 00 of 4 0.80None
Larval hindgut37 34 of 411.16Up
Larval fat body6 10 of 4 2.00None
Larval trachea24 114 of 4 7.25Up
Larval carcass118 244 of 435.24Up
S2 cells (growing)2 00 of 4 0.71None
Whole fly3 10 of 4



(CG3119):

Annotation Number : CG3119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031466
Gbrowse : chr2L:2836098-2837831 (-) // 100.0 //
Probeset : 1635783_a_at
Accessions : protein= NP_608717; /// NP_722845;, nucleotide= NM_134873; /// NM_164504;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0016757 // transferase activity
FlyMine data for FBgn0031466.
Homophila reports that CG3119 is a close match (4e-14) to human gene C1GALT1C1;C1GALT2;COSMC (NP_689905), a gene associated with Tn syndrome, 300622 (3).
VDRC has 2 RNAi stocks for FBgn0031466 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.70None
Head5 10 of 4 2.40None
Eye3 10 of 4 1.71None
Thoracicoabdominal ganglion2 10 of 4 1.00None
Salivary gland5 41 of 4 2.55None
Crop3 10 of 4 1.60None
Midgut3 10 of 4 1.50None
Tubule2 00 of 4 1.20None
Hindgut7 00 of 4 3.00Up
Heart5 00 of 4 2.16Up
Fat body4 20 of 4 1.86None
Ovary1 00 of 4 0.40None
Testis2 10 of 4 1.10None
Male accessory glands4 20 of 4 2.10None
Virgin spermatheca6 10 of 4 2.63None
Mated spermatheca2 10 of 4 0.84None
Adult carcass13 20 of 4 5.70Up
Larval CNS0 00 of 4 0.27None
Larval Salivary gland1 00 of 4 0.70None
Larval midgut15 10 of 4 6.74Up
Larval tubule3 10 of 4 1.50None
Larval hindgut21 21 of 4 9.23Up
Larval fat body3 10 of 4 1.40None
Larval trachea16 84 of 4 7.03Up
Larval carcass66 144 of 428.77Up
S2 cells (growing)1 00 of 4 0.48None
Whole fly2 00 of 4

Looking for FBgn0031466. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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