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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031467 through 18771 annotations produced 1 hits



CG2973 (Cpr23B):

Annotation Number : CG2973
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031467
Gbrowse : chr2L:2838413-2839549 (+) // 100.0 //
Probeset : 1640890_at
Accessions : protein= NP_608718;, nucleotide= NM_134874;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0031467.
BDGP gene expression has embryonic in situ data for CG2973: 14 pix of staining in 3 body parts.
VDRC has 1 RNAi stocks for FBgn0031467 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.60None
Head1 ± 00 of 4 1.40None
Eye0 ± 00 of 4 0.45None
Thoracicoabdominal ganglion0 ± 00 of 4 0.60None
Salivary gland7 ± 30 of 4 6.72None
Crop1 ± 00 of 4 1.40None
Midgut1 ± 00 of 4 0.90None
Tubule1 ± 00 of 4 1.20None
Hindgut1 ± 00 of 4 1.00None
Heart2 ± 00 of 4 1.72None
Fat body2 ± 10 of 4 1.81None
Ovary1 ± 00 of 4 1.10None
Testis2 ± 10 of 4 2.30None
Male accessory glands4 ± 10 of 4 3.40None
Virgin spermatheca0 ± 00 of 4 0.77None
Mated spermatheca1 ± 00 of 4 0.85None
Adult carcass1 ± 00 of 4 1.20None
Larval CNS2 ± 20 of 4 2.00None
Larval Salivary gland1 ± 00 of 4 0.94None
Larval midgut4 ± 20 of 4 4.06None
Larval tubule0 ± 00 of 4 0.70None
Larval hindgut1 ± 00 of 4 0.89None
Larval fat body3 ± 00 of 4 3.00None
Larval trachea1 ± 00 of 4 0.94None
Larval carcass1 ± 00 of 4 1.57None
S2 cells (growing)0 ± 00 of 4 0.70None
Whole fly1 ± 00 of 4

Looking for FBgn0031467. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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