FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031468 through 18771 annotations produced 2 hits

chr2R:20486607-20487344 (-) // 100.0 // ( /// ATP synthase):

Annotation Number : CG4692
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638109_s_at
Accessions : protein= , nucleotide= NP_611940; /// NP_726463;
Pathway : 0006486 // protein glycosylation // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from
Interpro : "0000276 // mitochondrial proton-transporting ATP synthase complex
FlyMine data for full length.
BioGrid reports that CG4692 interacts with CG5645 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2584 ± 55	4 of 4	0.90	None
Head	3330 ± 129	4 of 4	1.20	Up
Eye	4272 ± 81	4 of 4	1.56	Up
Thoracicoabdominal ganglion	3149 ± 77	4 of 4	1.10	Up
Salivary gland	7204 ± 210	4 of 4	2.63	Up
Crop	3309 ± 201	4 of 4	1.20	None
Midgut	3430 ± 52	4 of 4	1.30	Up
Tubule	2604 ± 72	4 of 4	1.00	None
Hindgut	4343 ± 97	4 of 4	1.60	Up
Heart	4277 ± 264	4 of 4	1.56	Up
Fat body	4248 ± 350	4 of 4	1.55	Up
Ovary	1881 ± 38	4 of 4	0.70	Down
Testis	1483 ± 52	4 of 4	0.50	Down
Male accessory glands	2707 ± 120	4 of 4	1.00	None
Virgin spermatheca	4426 ± 78	4 of 4	1.62	Up
Mated spermatheca	4316 ± 138	4 of 4	1.58	Up
Adult carcass	5023 ± 277	4 of 4	1.80	Up
Larval CNS	1949 ± 70	4 of 4	0.71	Down
Larval Salivary gland	4586 ± 104	4 of 4	1.67	Up
Larval midgut	3932 ± 66	4 of 4	1.44	Up
Larval tubule	2793 ± 215	4 of 4	1.00	None
Larval hindgut	3749 ± 45	4 of 4	1.37	Up
Larval fat body	1620 ± 86	4 of 4	0.60	Down
Larval trachea	2786 ± 111	4 of 4	1.02	None
Larval carcass	3774 ± 319	4 of 4	1.38	Up
S2 cells (growing)	2086 ± 5	4 of 4	0.76	Down
Whole fly	2740 ± 76	4 of 4

(CG2975):

Annotation Number : CG2975
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031468
Gbrowse : chr2L:2840996-2842438 (+) // 100.0 //
Probeset : 1633410_at
Accessions : protein= NP_608719;, nucleotide= NM_134875;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0016757 // transferase activity
FlyMine data for FBgn0031468.
Homophila reports that CG2975 is a close match (9e-19) to human gene C1GALT1C1;C1GALT2;COSMC (NP_689905), a gene associated with Tn syndrome, 300622 (3).
BioGrid reports that CG2975 interacts with CG8571 CG3403 .
VDRC has 1 RNAi stocks for FBgn0031468 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	1 of 4	0.30	Down
Head	10 ± 1	1 of 4	0.50	Down
Eye	4 ± 1	0 of 4	0.18	Down
Thoracicoabdominal ganglion	6 ± 1	0 of 4	0.30	Down
Salivary gland	39 ± 4	3 of 4	1.70	Up
Crop	92 ± 3	4 of 4	4.00	Up
Midgut	23 ± 2	0 of 4	1.00	None
Tubule	13 ± 1	0 of 4	0.60	Down
Hindgut	43 ± 2	4 of 4	1.90	Up
Heart	1 ± 1	0 of 4	0.08	Down
Fat body	22 ± 6	3 of 4	0.99	None
Ovary	4 ± 0	1 of 4	0.20	Down
Testis	14 ± 1	4 of 4	0.60	Down
Male accessory glands	1345 ± 24	4 of 4	58.40	Up
Virgin spermatheca	13 ± 1	3 of 4	0.58	Down
Mated spermatheca	13 ± 3	2 of 4	0.57	None
Adult carcass	22 ± 2	0 of 4	1.00	None
Larval CNS	11 ± 1	0 of 4	0.50	Down
Larval Salivary gland	72 ± 8	4 of 4	3.13	Up
Larval midgut	23 ± 1	2 of 4	1.01	None
Larval tubule	12 ± 1	0 of 4	0.50	Down
Larval hindgut	120 ± 7	4 of 4	5.23	Up
Larval fat body	9 ± 4	0 of 4	0.40	Down
Larval trachea	68 ± 10	4 of 4	2.97	Up
Larval carcass	32 ± 4	1 of 4	1.43	None
S2 cells (growing)	12 ± 0	0 of 4	0.53	Down
Whole fly	23 ± 1	4 of 4

Looking for FBgn0031468. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720