Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031468 through 18771 annotations produced 2 hits



(CG2975):

Annotation Number : CG2975
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031468
Gbrowse : chr2L:2840996-2842438 (+) // 100.0 //
Probeset : 1633410_at
Accessions : protein= NP_608719;, nucleotide= NM_134875;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0016757 // transferase activity
FlyMine data for FBgn0031468.
Homophila reports that CG2975 is a close match (9e-19) to human gene C1GALT1C1;C1GALT2;COSMC (NP_689905), a gene associated with Tn syndrome, 300622 (3).
BioGrid reports that CG2975 interacts with CG8571 CG3403 .
VDRC has 1 RNAi stocks for FBgn0031468 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 0.30Down
Head10 11 of 4 0.50Down
Eye4 10 of 4 0.18Down
Thoracicoabdominal ganglion6 10 of 4 0.30Down
Salivary gland39 43 of 4 1.70Up
Crop92 34 of 4 4.00Up
Midgut23 20 of 4 1.00None
Tubule13 10 of 4 0.60Down
Hindgut43 24 of 4 1.90Up
Heart1 10 of 4 0.08Down
Fat body22 63 of 4 0.99None
Ovary4 01 of 4 0.20Down
Testis14 14 of 4 0.60Down
Male accessory glands1345 244 of 458.40Up
Virgin spermatheca13 13 of 4 0.58Down
Mated spermatheca13 32 of 4 0.57None
Adult carcass22 20 of 4 1.00None
Larval CNS11 10 of 4 0.50Down
Larval Salivary gland72 84 of 4 3.13Up
Larval midgut23 12 of 4 1.01None
Larval tubule12 10 of 4 0.50Down
Larval hindgut120 74 of 4 5.23Up
Larval fat body9 40 of 4 0.40Down
Larval trachea68 104 of 4 2.97Up
Larval carcass32 41 of 4 1.43None
S2 cells (growing)12 00 of 4 0.53Down
Whole fly23 14 of 4



chr2R:20486607-20487344 (-) // 100.0 // ( /// ATP synthase):

Annotation Number : CG4692
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638109_s_at
Accessions : protein= , nucleotide= NP_611940; /// NP_726463;
Pathway : 0006486 // protein glycosylation // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from
Interpro : "0000276 // mitochondrial proton-transporting ATP synthase complex
FlyMine data for full length.
BioGrid reports that CG4692 interacts with CG5645 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2584 554 of 4 0.90None
Head3330 1294 of 4 1.20Up
Eye4272 814 of 4 1.56Up
Thoracicoabdominal ganglion3149 774 of 4 1.10Up
Salivary gland7204 2104 of 4 2.63Up
Crop3309 2014 of 4 1.20None
Midgut3430 524 of 4 1.30Up
Tubule2604 724 of 4 1.00None
Hindgut4343 974 of 4 1.60Up
Heart4277 2644 of 4 1.56Up
Fat body4248 3504 of 4 1.55Up
Ovary1881 384 of 4 0.70Down
Testis1483 524 of 4 0.50Down
Male accessory glands2707 1204 of 4 1.00None
Virgin spermatheca4426 784 of 4 1.62Up
Mated spermatheca4316 1384 of 4 1.58Up
Adult carcass5023 2774 of 4 1.80Up
Larval CNS1949 704 of 4 0.71Down
Larval Salivary gland4586 1044 of 4 1.67Up
Larval midgut3932 664 of 4 1.44Up
Larval tubule2793 2154 of 4 1.00None
Larval hindgut3749 454 of 4 1.37Up
Larval fat body1620 864 of 4 0.60Down
Larval trachea2786 1114 of 4 1.02None
Larval carcass3774 3194 of 4 1.38Up
S2 cells (growing)2086 54 of 4 0.76Down
Whole fly2740 764 of 4

Looking for FBgn0031468. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime