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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031469 through 18771 annotations produced 1 hits



(CG18558):

Annotation Number : CG18558
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031469
Gbrowse : chr2L:2842577-2844276 (-) // 100.0 //
Probeset : 1635418_at
Accessions : protein= NP_608720;, nucleotide= NM_134876;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0016757 // transferase activity
FlyMine data for FBgn0031469.
Homophila reports that CG18558 is a close match (6e-24) to human gene C1GALT1C1;C1GALT2;COSMC (NP_689905), a gene associated with Tn syndrome, 300622 (3).
VDRC has 2 RNAi stocks for FBgn0031469 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.40None
Eye2 ± 00 of 4 0.30None
Thoracicoabdominal ganglion3 ± 10 of 4 0.50None
Salivary gland9 ± 30 of 4 1.32None
Crop4 ± 00 of 4 0.60None
Midgut2 ± 00 of 4 0.30None
Tubule4 ± 00 of 4 0.70Down
Hindgut5 ± 10 of 4 0.70None
Heart2 ± 10 of 4 0.33None
Fat body3 ± 20 of 4 0.51None
Ovary2 ± 11 of 4 0.30None
Testis51 ± 44 of 4 7.50Up
Male accessory glands11 ± 12 of 4 1.70None
Virgin spermatheca3 ± 10 of 4 0.47None
Mated spermatheca2 ± 10 of 4 0.40None
Adult carcass4 ± 10 of 4 0.60None
Larval CNS2 ± 10 of 4 0.34None
Larval Salivary gland6 ± 21 of 4 0.96None
Larval midgut5 ± 10 of 4 0.74None
Larval tubule2 ± 00 of 4 0.40None
Larval hindgut4 ± 00 of 4 0.57None
Larval fat body10 ± 12 of 4 1.50None
Larval trachea4 ± 20 of 4 0.62None
Larval carcass5 ± 10 of 4 0.79None
S2 cells (growing)10 ± 04 of 4 1.50None
Whole fly6 ± 11 of 4

Looking for FBgn0031469. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime