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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031470 through 18771 annotations produced 1 hits



(CG18557):

Annotation Number : CG18557
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031470
Gbrowse : chr2L:2844618-2845711 (-) // 100.0 //
Probeset : 1639643_at
Accessions : protein= NP_608721;, nucleotide= NM_134877;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0031470.
Homophila reports that CG18557 is a close match (5e-11) to human gene BSSP3;MRT1;PRSS12 (NP_003610), a gene associated with Mental retardation, autosomal recessive 1, 249500 (3).
VDRC has 2 RNAi stocks for FBgn0031470 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.60None
Head4 ± 10 of 4 0.70None
Eye1 ± 00 of 4 0.23Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.50None
Salivary gland13 ± 30 of 4 2.28None
Crop5 ± 10 of 4 1.00None
Midgut5 ± 10 of 4 1.00None
Tubule5 ± 00 of 4 0.90None
Hindgut6 ± 20 of 4 1.20None
Heart3 ± 10 of 4 0.59None
Fat body5 ± 20 of 4 0.88None
Ovary2 ± 00 of 4 0.50None
Testis2 ± 10 of 4 0.50None
Male accessory glands34 ± 173 of 4 5.90None
Virgin spermatheca6 ± 10 of 4 1.13None
Mated spermatheca8 ± 10 of 4 1.44None
Adult carcass5 ± 00 of 4 1.00None
Larval CNS4 ± 10 of 4 0.86None
Larval Salivary gland23 ± 53 of 4 4.04None
Larval midgut3 ± 00 of 4 0.61None
Larval tubule7 ± 20 of 4 1.30None
Larval hindgut6 ± 00 of 4 1.17None
Larval fat body162 ± 94 of 428.30Up
Larval trachea3 ± 20 of 4 0.60None
Larval carcass5 ± 10 of 4 0.89None
S2 cells (growing)1748 ± 154 of 4304.10Up
Whole fly5 ± 10 of 4

Looking for FBgn0031470. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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