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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031472 through 18771 annotations produced 1 hits



(CG2983):

Annotation Number : CG2983
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031472
Gbrowse : chr2L:2847631-2848734 (+) // 100.0 //
Probeset : 1631182_at
Accessions : protein= NP_608723;, nucleotide= NM_134879;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0016757 // transferase activity
FlyMine data for FBgn0031472.
Homophila reports that CG2983 is a close match (2e-17) to human gene C1GALT1C1;C1GALT2;COSMC (NP_689905), a gene associated with Tn syndrome, 300622 (3).
VDRC has 3 RNAi stocks for FBgn0031472 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 01 of 4 0.20None
Head5 10 of 4 0.30None
Eye3 10 of 4 0.15Down
Thoracicoabdominal ganglion3 11 of 4 0.20Down
Salivary gland14 31 of 4 0.68None
Crop5 21 of 4 0.30None
Midgut6 00 of 4 0.30None
Tubule8 01 of 4 0.40Down
Hindgut7 11 of 4 0.30None
Heart4 10 of 4 0.20Down
Fat body7 01 of 4 0.37None
Ovary5 02 of 4 0.20None
Testis10 11 of 4 0.50None
Male accessory glands1378 284 of 466.90Up
Virgin spermatheca3 10 of 4 0.19Down
Mated spermatheca5 10 of 4 0.25None
Adult carcass9 10 of 4 0.50None
Larval CNS3 01 of 4 0.19None
Larval Salivary gland5 01 of 4 0.27None
Larval midgut7 20 of 4 0.37None
Larval tubule6 11 of 4 0.30None
Larval hindgut5 12 of 4 0.26None
Larval fat body11 30 of 4 0.60None
Larval trachea4 00 of 4 0.21None
Larval carcass5 11 of 4 0.27None
S2 cells (growing)20 24 of 4 0.97None
Whole fly20 54 of 4

Looking for FBgn0031472. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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