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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031474 through 18771 annotations produced 1 hits



(CG2991):

Annotation Number : CG2991
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031474
Gbrowse : chr2L:2857158-2868548 (+) // 100.0 //
Probeset : 1633253_s_at
Accessions : protein= NP_608725; /// NP_722856; /// NP_722857;, nucleotide= NM_134881; /// NM_164509; /// NM_164510;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0031474.
VDRC has 2 RNAi stocks for FBgn0031474 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain549 ± 64 of 4 2.30Up
Head369 ± 274 of 4 1.60Up
Eye607 ± 404 of 4 2.58Up
Thoracicoabdominal ganglion577 ± 164 of 4 2.50Up
Salivary gland278 ± 154 of 4 1.18None
Crop755 ± 174 of 4 3.20Up
Midgut341 ± 94 of 4 1.50Up
Tubule529 ± 244 of 4 2.30Up
Hindgut632 ± 124 of 4 2.70Up
Heart1124 ± 224 of 4 4.78Up
Fat body600 ± 294 of 4 2.55Up
Ovary289 ± 74 of 4 1.20Up
Testis92 ± 14 of 4 0.40Down
Male accessory glands443 ± 294 of 4 1.90Up
Virgin spermatheca185 ± 114 of 4 0.79Down
Mated spermatheca221 ± 124 of 4 0.94None
Adult carcass492 ± 294 of 4 2.10Up
Larval CNS449 ± 224 of 4 1.91Up
Larval Salivary gland224 ± 134 of 4 0.95None
Larval midgut380 ± 74 of 4 1.62Up
Larval tubule431 ± 144 of 4 1.80Up
Larval hindgut476 ± 214 of 4 2.03Up
Larval fat body54 ± 84 of 4 0.20Down
Larval trachea361 ± 324 of 4 1.54Up
Larval carcass184 ± 134 of 4 0.79Down
S2 cells (growing)471 ± 94 of 4 2.01Up
Whole fly235 ± 94 of 4

Looking for FBgn0031474. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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