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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031476 through 18771 annotations produced 1 hits



(CG8813):

Annotation Number : CG8813
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031476
Gbrowse : chr2L:2869651-2870649 (+) // 100.0 //
Probeset : 1624880_at
Accessions : protein= NP_608727;, nucleotide= NM_134883;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031476.
BDGP gene expression has embryonic in situ data for CG8813: 8 pix of staining in 1 body parts.
BioGrid reports that CG8813 interacts with CG9624 .
VDRC has 1 RNAi stocks for FBgn0031476 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.00Down
Head5 00 of 4 0.00Down
Eye5 10 of 4 0.02Down
Thoracicoabdominal ganglion4 10 of 4 0.00Down
Salivary gland5 10 of 4 0.02Down
Crop6 10 of 4 0.00Down
Midgut4 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut6 10 of 4 0.00Down
Heart4 10 of 4 0.02Down
Fat body3 10 of 4 0.02Down
Ovary2 10 of 4 0.00Down
Testis1970 684 of 4 8.40Up
Male accessory glands8 30 of 4 0.00Down
Virgin spermatheca5 00 of 4 0.02Down
Mated spermatheca4 10 of 4 0.02Down
Adult carcass15 22 of 4 0.10Down
Larval CNS3 10 of 4 0.02Down
Larval Salivary gland8 00 of 4 0.04Down
Larval midgut1 00 of 4 0.01Down
Larval tubule5 20 of 4 0.00Down
Larval hindgut5 10 of 4 0.02Down
Larval fat body221 1194 of 4 0.90None
Larval trachea9 101 of 4 0.04Down
Larval carcass8 10 of 4 0.04Down
S2 cells (growing)2 10 of 4 0.01Down
Whole fly234 144 of 4

Looking for FBgn0031476. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime