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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031483 through 18771 annotations produced 1 hits



(CG9641):

Annotation Number : CG9641
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031483
Gbrowse : chr2L:2974858-2976859 (-) // 99.74 //
Probeset : 1635939_a_at
Accessions : protein= NP_608731; /// NP_722865;, nucleotide= NM_134887; /// NM_164518;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031483.
BDGP gene expression has embryonic in situ data for CG9641: 11 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0031483 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031483 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain148 ± 14 of 4 0.70Down
Head54 ± 44 of 4 0.30Down
Eye109 ± 104 of 4 0.55Down
Thoracicoabdominal ganglion122 ± 34 of 4 0.60Down
Salivary gland18 ± 60 of 4 0.09Down
Crop49 ± 34 of 4 0.20Down
Midgut9 ± 10 of 4 0.00Down
Tubule14 ± 40 of 4 0.10Down
Hindgut22 ± 14 of 4 0.10Down
Heart11 ± 23 of 4 0.06Down
Fat body9 ± 50 of 4 0.04Down
Ovary547 ± 84 of 4 2.70Up
Testis505 ± 114 of 4 2.50Up
Male accessory glands35 ± 22 of 4 0.20Down
Virgin spermatheca15 ± 20 of 4 0.08Down
Mated spermatheca17 ± 42 of 4 0.09Down
Adult carcass15 ± 52 of 4 0.10Down
Larval CNS138 ± 64 of 4 0.69Down
Larval Salivary gland27 ± 43 of 4 0.14Down
Larval midgut9 ± 10 of 4 0.05Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut22 ± 14 of 4 0.11Down
Larval fat body75 ± 303 of 4 0.40Down
Larval trachea47 ± 64 of 4 0.24Down
Larval carcass25 ± 14 of 4 0.12Down
S2 cells (growing)204 ± 34 of 4 1.02None
Whole fly200 ± 84 of 4

Looking for FBgn0031483. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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