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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031484 through 18771 annotations produced 1 hits



(CG3165):

Annotation Number : CG3165
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031484
Gbrowse : chr2L:2977126-2978501 (+) // 100.0 //
Probeset : 1625524_at
Accessions : protein= NP_608732;, nucleotide= NM_134888;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation
FlyMine data for FBgn0031484.
BDGP gene expression has embryonic in situ data for CG3165: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031484 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 ± 24 of 4 0.60Down
Head68 ± 14 of 4 0.60Down
Eye64 ± 44 of 4 0.59Down
Thoracicoabdominal ganglion48 ± 24 of 4 0.40Down
Salivary gland34 ± 44 of 4 0.32Down
Crop90 ± 54 of 4 0.80Down
Midgut92 ± 34 of 4 0.90Down
Tubule50 ± 34 of 4 0.50Down
Hindgut61 ± 14 of 4 0.60Down
Heart43 ± 14 of 4 0.40Down
Fat body46 ± 54 of 4 0.43Down
Ovary221 ± 74 of 4 2.00Up
Testis210 ± 54 of 4 1.90Up
Male accessory glands42 ± 14 of 4 0.40Down
Virgin spermatheca18 ± 24 of 4 0.18Down
Mated spermatheca28 ± 14 of 4 0.27Down
Adult carcass52 ± 24 of 4 0.50Down
Larval CNS139 ± 54 of 4 1.29Up
Larval Salivary gland73 ± 54 of 4 0.68Down
Larval midgut55 ± 24 of 4 0.51Down
Larval tubule58 ± 44 of 4 0.50Down
Larval hindgut57 ± 24 of 4 0.53Down
Larval fat body44 ± 84 of 4 0.40Down
Larval trachea135 ± 144 of 4 1.25Up
Larval carcass65 ± 14 of 4 0.61Down
S2 cells (growing)257 ± 24 of 4 2.38Up
Whole fly108 ± 44 of 4

Looking for FBgn0031484. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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