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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031485 through 18771 annotations produced 1 hits



(CG9643):

Annotation Number : CG9643
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031485
Gbrowse : chr2L:2978525-2979410 (-) // 100.0 //
Probeset : 1637143_at
Accessions : protein= NP_608733;, nucleotide= NM_134889;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation
FlyMine data for FBgn0031485.
BDGP gene expression has embryonic in situ data for CG9643: 11 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0031485 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 14 of 4 0.80Down
Head78 54 of 4 0.80None
Eye79 64 of 4 0.81None
Thoracicoabdominal ganglion81 34 of 4 0.80None
Salivary gland171 124 of 4 1.74Up
Crop96 74 of 4 1.00None
Midgut97 24 of 4 1.00None
Tubule98 54 of 4 1.00None
Hindgut90 34 of 4 0.90None
Heart69 14 of 4 0.71Down
Fat body79 34 of 4 0.81None
Ovary166 64 of 4 1.70Up
Testis37 24 of 4 0.40Down
Male accessory glands169 64 of 4 1.70Up
Virgin spermatheca76 34 of 4 0.78Down
Mated spermatheca83 74 of 4 0.85None
Adult carcass71 34 of 4 0.70Down
Larval CNS139 74 of 4 1.42Up
Larval Salivary gland153 64 of 4 1.56Up
Larval midgut55 04 of 4 0.56Down
Larval tubule86 24 of 4 0.90None
Larval hindgut75 34 of 4 0.77Down
Larval fat body59 54 of 4 0.60Down
Larval trachea122 174 of 4 1.25None
Larval carcass72 54 of 4 0.74Down
S2 cells (growing)113 54 of 4 1.16None
Whole fly98 64 of 4

Looking for FBgn0031485. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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