FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031488 through 18771 annotations produced 1 hits

(CG17265):

Annotation Number : CG17265
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031488
Gbrowse : chr2L:3013500-3016069 (+) // 100.0 //
Probeset : 1623810_at
Accessions : protein= NP_608734;, nucleotide= NM_134890;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031488.
BDGP gene expression has embryonic in situ data for CG17265: 46 pix of staining in 17 body parts.
BioGrid reports that CG17265 interacts with CG7281 CG8505 CG17265 CG18362 CG2925 CG30077 CG3081 CG31211 CG31291 CG3165 CG3613 CG3758 CG3880 CG4008 CG4198 CG4533 CG5105 CG5848 CG6758 CG6856 CG6985 CG7172 CG8173 .
TRiP has 1 RNAi stocks for FBgn0031488 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031488 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.10	Down
Head	21 ± 1	4 of 4	1.10	None
Eye	60 ± 3	4 of 4	3.14	Up
Thoracicoabdominal ganglion	5 ± 1	0 of 4	0.30	Down
Salivary gland	3 ± 1	0 of 4	0.18	Down
Crop	259 ± 23	4 of 4	13.40	Up
Midgut	11 ± 1	3 of 4	0.60	Down
Tubule	8 ± 0	1 of 4	0.40	Down
Hindgut	51 ± 2	4 of 4	2.70	Up
Heart	10 ± 0	1 of 4	0.52	Down
Fat body	4 ± 2	0 of 4	0.21	Down
Ovary	24 ± 1	4 of 4	1.30	Up
Testis	20 ± 1	4 of 4	1.10	None
Male accessory glands	8 ± 2	0 of 4	0.40	Down
Virgin spermatheca	17 ± 1	4 of 4	0.89	None
Mated spermatheca	15 ± 2	4 of 4	0.80	None
Adult carcass	13 ± 1	2 of 4	0.70	Down
Larval CNS	92 ± 9	4 of 4	4.79	Up
Larval Salivary gland	22 ± 3	3 of 4	1.16	None
Larval midgut	11 ± 0	0 of 4	0.61	Down
Larval tubule	16 ± 1	4 of 4	0.80	None
Larval hindgut	50 ± 6	4 of 4	2.60	Up
Larval fat body	15 ± 2	3 of 4	0.80	None
Larval trachea	270 ± 36	4 of 4	13.94	Up
Larval carcass	41 ± 1	4 of 4	2.16	Up
S2 cells (growing)	20 ± 1	4 of 4	1.06	None
Whole fly	19 ± 1	4 of 4

Looking for FBgn0031488. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720