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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031489 through 18771 annotations produced 1 hits



(CG17224):

Annotation Number : CG17224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031489
Gbrowse : chr2L:3016590-3018289 (-) // 100.0 //
Probeset : 1640103_s_at
Accessions : protein= NP_001162855; /// NP_608735; /// NP_722867;, nucleotide= NM_001169384; /// NM_134891; /// NM_164520;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004850 // uridine phosphorylase activity // i
FlyMine data for FBgn0031489.
VDRC has 3 RNAi stocks for FBgn0031489 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 24 of 4 0.20Down
Head272 ± 314 of 4 1.60Up
Eye294 ± 284 of 4 1.71Up
Thoracicoabdominal ganglion37 ± 24 of 4 0.20Down
Salivary gland116 ± 114 of 4 0.67Down
Crop128 ± 24 of 4 0.70Down
Midgut696 ± 264 of 4 4.00Up
Tubule587 ± 474 of 4 3.40Up
Hindgut243 ± 164 of 4 1.40Up
Heart619 ± 564 of 4 3.59Up
Fat body608 ± 504 of 4 3.53Up
Ovary15 ± 13 of 4 0.10Down
Testis81 ± 24 of 4 0.50Down
Male accessory glands29 ± 33 of 4 0.20Down
Virgin spermatheca804 ± 314 of 4 4.66Up
Mated spermatheca803 ± 934 of 4 4.66Up
Adult carcass259 ± 94 of 4 1.50Up
Larval CNS2 ± 20 of 4 0.02Down
Larval Salivary gland8 ± 31 of 4 0.05Down
Larval midgut202 ± 164 of 4 1.18None
Larval tubule52 ± 64 of 4 0.30Down
Larval hindgut47 ± 44 of 4 0.28Down
Larval fat body1277 ± 1454 of 4 7.40Up
Larval trachea14 ± 52 of 4 0.08Down
Larval carcass173 ± 224 of 4 1.00None
S2 cells (growing)671 ± 74 of 4 3.89Up
Whole fly172 ± 134 of 4

Looking for FBgn0031489. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime