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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031490 through 18771 annotations produced 1 hits



(CG17264):

Annotation Number : CG17264
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031490
Gbrowse : chr2L:3018507-3021506 (+) // 100.0 //
Probeset : 1628315_at
Accessions : protein= NP_608736;, nucleotide= NM_134892;
FlyMine data for FBgn0031490.
BioGrid reports that CG17264 interacts with CG32635 .
VDRC has 2 RNAi stocks for FBgn0031490 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 04 of 4 0.50Down
Head33 ± 34 of 4 1.10None
Eye27 ± 44 of 4 0.89None
Thoracicoabdominal ganglion22 ± 23 of 4 0.70None
Salivary gland27 ± 73 of 4 0.89None
Crop26 ± 23 of 4 0.90None
Midgut47 ± 44 of 4 1.50Up
Tubule58 ± 44 of 4 1.90Up
Hindgut38 ± 34 of 4 1.20None
Heart25 ± 34 of 4 0.83None
Fat body36 ± 34 of 4 1.18None
Ovary20 ± 13 of 4 0.70None
Testis10 ± 11 of 4 0.40Down
Male accessory glands18 ± 22 of 4 0.60None
Virgin spermatheca26 ± 34 of 4 0.86None
Mated spermatheca33 ± 44 of 4 1.10None
Adult carcass31 ± 43 of 4 1.00None
Larval CNS10 ± 20 of 4 0.35Down
Larval Salivary gland12 ± 20 of 4 0.41Down
Larval midgut14 ± 20 of 4 0.49Down
Larval tubule31 ± 54 of 4 1.00None
Larval hindgut15 ± 14 of 4 0.51Down
Larval fat body51 ± 64 of 4 1.70Up
Larval trachea4 ± 30 of 4 0.14Down
Larval carcass13 ± 03 of 4 0.44Down
S2 cells (growing)358 ± 34 of 411.74Up
Whole fly30 ± 44 of 4

Looking for FBgn0031490. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime