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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031491 through 18771 annotations produced 1 hits



alpha4GT1 (alpha4GT1):

Annotation Number : CG17223
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031491
Gbrowse : chr2L:3021305-3023148 (-) // 100.0 //
Probeset : 1632846_at
Accessions : protein= NP_608737;, nucleotide= NM_134893;
Pathway : 0005795 // Golgi stack // inferred from electronic annotation
Interpro : "0008376 // acetylgalactosaminyltransferase activity // inferred from mutant phenotype /// 0008378 // galactosyltransfer
FlyMine data for FBgn0031491.
Homophila reports that CG17223 is a close match (6e-37) to human gene A4GALT;PK (NP_059132), a gene associated with [Blood group, P system], 111400 (3).
VDRC has 2 RNAi stocks for FBgn0031491 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain359 ± 74 of 4 1.70Up
Head247 ± 144 of 4 1.20None
Eye160 ± 54 of 4 0.76Down
Thoracicoabdominal ganglion264 ± 54 of 4 1.20Up
Salivary gland133 ± 44 of 4 0.62Down
Crop124 ± 54 of 4 0.60Down
Midgut90 ± 34 of 4 0.40Down
Tubule208 ± 64 of 4 1.00None
Hindgut120 ± 34 of 4 0.60Down
Heart371 ± 134 of 4 1.75Up
Fat body359 ± 314 of 4 1.69Up
Ovary315 ± 64 of 4 1.50Up
Testis90 ± 24 of 4 0.40Down
Male accessory glands76 ± 14 of 4 0.40Down
Virgin spermatheca340 ± 304 of 4 1.60Up
Mated spermatheca412 ± 274 of 4 1.94Up
Adult carcass215 ± 64 of 4 1.00None
Larval CNS281 ± 114 of 4 1.32Up
Larval Salivary gland91 ± 24 of 4 0.43Down
Larval midgut103 ± 114 of 4 0.48Down
Larval tubule352 ± 44 of 4 1.70Up
Larval hindgut147 ± 74 of 4 0.69Down
Larval fat body573 ± 414 of 4 2.70Up
Larval trachea220 ± 114 of 4 1.04None
Larval carcass131 ± 44 of 4 0.62Down
S2 cells (growing)536 ± 34 of 4 2.52Up
Whole fly213 ± 94 of 4

Looking for FBgn0031491. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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