FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031492 through 18771 annotations produced 1 hits

(CG3542):

Annotation Number : CG3542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031492
Gbrowse : chr2L:3023234-3026450 (+) // 100.0 //
Probeset : 1638446_a_at
Accessions : protein= NP_608738; /// NP_722868;, nucleotide= NM_134894; /// NM_164521;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0031492.
BDGP gene expression has embryonic in situ data for CG3542: 18 pix of staining in 12 body parts.
BioGrid reports that CG3542 interacts with CG4303 CG3861 .
TRiP has 1 RNAi stocks for FBgn0031492 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031492 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	98 ± 2	4 of 4	1.20	None
Head	46 ± 3	4 of 4	0.60	Down
Eye	29 ± 1	4 of 4	0.36	Down
Thoracicoabdominal ganglion	85 ± 4	4 of 4	1.00	None
Salivary gland	53 ± 5	4 of 4	0.66	None
Crop	43 ± 4	4 of 4	0.50	Down
Midgut	48 ± 3	4 of 4	0.60	Down
Tubule	49 ± 1	4 of 4	0.60	Down
Hindgut	53 ± 4	4 of 4	0.60	Down
Heart	39 ± 2	4 of 4	0.49	Down
Fat body	39 ± 1	3 of 4	0.49	Down
Ovary	200 ± 7	4 of 4	2.40	Up
Testis	33 ± 1	4 of 4	0.40	Down
Male accessory glands	80 ± 6	4 of 4	1.00	None
Virgin spermatheca	43 ± 2	4 of 4	0.53	Down
Mated spermatheca	48 ± 3	3 of 4	0.59	Down
Adult carcass	41 ± 3	4 of 4	0.50	Down
Larval CNS	230 ± 17	4 of 4	2.82	Up
Larval Salivary gland	105 ± 4	4 of 4	1.29	None
Larval midgut	50 ± 5	4 of 4	0.61	Down
Larval tubule	48 ± 5	4 of 4	0.60	Down
Larval hindgut	72 ± 6	4 of 4	0.88	None
Larval fat body	57 ± 5	4 of 4	0.70	None
Larval trachea	102 ± 7	4 of 4	1.25	None
Larval carcass	80 ± 4	4 of 4	0.98	None
S2 cells (growing)	131 ± 5	4 of 4	1.61	Up
Whole fly	81 ± 9	4 of 4

Looking for FBgn0031492. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720