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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031496 through 18771 annotations produced 1 hits



(CG17258):

Annotation Number : CG17258
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031496
Gbrowse : chr2L:3032335-3035348 (-) // 100.0 //
Probeset : 1641706_at
Accessions : protein= NP_608742;, nucleotide= NM_134898;
FlyMine data for FBgn0031496.
BDGP gene expression has embryonic in situ data for CG17258: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031496 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30Down
Head1 ± 00 of 4 0.30Down
Eye1 ± 10 of 4 0.23Down
Thoracicoabdominal ganglion5 ± 01 of 4 0.90None
Salivary gland8 ± 50 of 4 1.31None
Crop6 ± 10 of 4 0.90None
Midgut4 ± 20 of 4 0.70None
Tubule4 ± 00 of 4 0.60Down
Hindgut2 ± 00 of 4 0.40Down
Heart1 ± 00 of 4 0.23Down
Fat body3 ± 40 of 4 0.57None
Ovary2 ± 10 of 4 0.30Down
Testis137 ± 54 of 420.40Up
Male accessory glands5 ± 00 of 4 0.80None
Virgin spermatheca6 ± 10 of 4 0.90None
Mated spermatheca3 ± 00 of 4 0.49None
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.47Down
Larval Salivary gland16 ± 00 of 4 2.41Up
Larval midgut4 ± 10 of 4 0.63None
Larval tubule3 ± 10 of 4 0.50None
Larval hindgut2 ± 00 of 4 0.32Down
Larval fat body24 ± 121 of 4 3.60None
Larval trachea4 ± 10 of 4 0.59None
Larval carcass1 ± 00 of 4 0.29Down
S2 cells (growing)2 ± 00 of 4 0.32Down
Whole fly6 ± 11 of 4

Looking for FBgn0031496. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime