FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031505 through 18771 annotations produced 1 hits

NADH ubiquinone oxidoreductase B14.5B (CG12400):

Annotation Number : CG12400
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031505
Gbrowse : chr2L:3145124-3145719 (-) // 100.0 //
Probeset : 1641506_at
Accessions : protein= NP_608750;, nucleotide= NM_134906;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0006120 // mitochondrial electron transport
Interpro : NADH to ubiquinone // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotati
FlyMine data for FBgn0031505.
BDGP gene expression has embryonic in situ data for CG12400: 10 pix of staining in 8 body parts.
BioGrid reports that CG12400 interacts with CG17870 CG2174 .
VDRC has 3 RNAi stocks for FBgn0031505 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1229 ± 17	4 of 4	1.10	None
Head	1447 ± 96	4 of 4	1.30	Up
Eye	1864 ± 98	4 of 4	1.71	Up
Thoracicoabdominal ganglion	1336 ± 51	4 of 4	1.20	Up
Salivary gland	1174 ± 28	4 of 4	1.08	None
Crop	956 ± 52	4 of 4	0.90	None
Midgut	1175 ± 61	4 of 4	1.10	None
Tubule	1144 ± 61	4 of 4	1.00	None
Hindgut	1663 ± 33	4 of 4	1.50	Up
Heart	1612 ± 91	4 of 4	1.48	Up
Fat body	1353 ± 70	4 of 4	1.24	Up
Ovary	502 ± 4	4 of 4	0.50	Down
Testis	312 ± 9	4 of 4	0.30	Down
Male accessory glands	610 ± 51	4 of 4	0.60	Down
Virgin spermatheca	1131 ± 36	4 of 4	1.04	None
Mated spermatheca	1150 ± 67	4 of 4	1.05	None
Adult carcass	2001 ± 89	4 of 4	1.80	Up
Larval CNS	586 ± 76	4 of 4	0.54	Down
Larval Salivary gland	798 ± 35	4 of 4	0.73	Down
Larval midgut	1020 ± 49	4 of 4	0.93	None
Larval tubule	688 ± 57	4 of 4	0.60	Down
Larval hindgut	1217 ± 70	4 of 4	1.11	None
Larval fat body	374 ± 32	4 of 4	0.30	Down
Larval trachea	700 ± 50	4 of 4	0.64	Down
Larval carcass	1159 ± 82	4 of 4	1.06	None
S2 cells (growing)	549 ± 26	4 of 4	0.50	Down
Whole fly	1092 ± 78	4 of 4

Looking for FBgn0031505. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720