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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031512 through 18771 annotations produced 1 hits



(CG15404):

Annotation Number : CG15404
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031512
Gbrowse : chr2L:3173991-3174425 (+) // 100.0 //
Probeset : 1637995_at
Accessions : protein= NP_608756;, nucleotide= NM_134912;
FlyMine data for FBgn0031512.
VDRC has 2 RNAi stocks for FBgn0031512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 10 of 4 1.00None
Head4 10 of 4 0.50Down
Eye3 20 of 4 0.40None
Thoracicoabdominal ganglion6 10 of 4 0.80None
Salivary gland9 20 of 4 1.20None
Crop5 30 of 4 0.70None
Midgut12 40 of 4 1.60None
Tubule7 10 of 4 0.90None
Hindgut7 10 of 4 0.90None
Heart6 30 of 4 0.75None
Fat body16 60 of 4 1.98None
Ovary3 10 of 4 0.40Down
Testis3 10 of 4 0.40Down
Male accessory glands20 62 of 4 2.40None
Virgin spermatheca11 22 of 4 1.40None
Mated spermatheca9 31 of 4 1.12None
Adult carcass12 60 of 4 1.50None
Larval CNS7 51 of 4 0.89None
Larval Salivary gland7967 6294 of 4974.64Up
Larval midgut11 00 of 4 1.36Up
Larval tubule9 00 of 4 1.10None
Larval hindgut8 00 of 4 0.98None
Larval fat body121 473 of 414.90None
Larval trachea7 30 of 4 0.86None
Larval carcass7 20 of 4 0.91None
S2 cells (growing)1 00 of 4 0.17Down
Whole fly8 00 of 4

Looking for FBgn0031512. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime